View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10044_5 (Length: 420)
Name: NF10044_5
Description: NF10044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10044_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 26 - 420
Target Start/End: Original strand, 34889538 - 34889920
Alignment:
| Q |
26 |
aagattccaatgccactctctcgataccctcttccacctccatactcaagaatgaaaaatcagaacaaaataaaacaggtagatataaagagagtgaaac |
125 |
Q |
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| T |
34889538 |
aagattccaatgccactctctcaataccctctttcacctccatactcaagaatgaaaaatcagaacaaaa--aaacaggtagatataaagagagtgaaac |
34889635 |
T |
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| Q |
126 |
cctagttaatcaatgtagggttagggttaaagggtcaacgaaaggagttaactttggtgttattgctgaaaagggtaacataaactgcggtgattttgta |
225 |
Q |
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| T |
34889636 |
cctagttaatcaatgtagggttagggttaaagggtcaacgaaaggagttaactttggtgttattgctgaaaagggtaacataaactgcggtgattttgta |
34889735 |
T |
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| Q |
226 |
cgaaatcgaaatgaaagttcgaggaaggtggtgaatattagatcggtttaacgttacgtaacgttaaaggtaaatttgtgttttgttttgttttggtaaa |
325 |
Q |
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| T |
34889736 |
cgaaatcgaaatgaaagttcgaggaaggtggtgaatattagatcggtttaacgttacgtaacgttaaaggtaaatttgtgttttgttttgttttggt--- |
34889832 |
T |
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| Q |
326 |
ttgatgaaaattgatgaatggaagataggaggatgaaaagatgaagatactggaaatggaaaagagtcgtatatttgaatgtttgagtttgactg |
420 |
Q |
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| T |
34889833 |
-------aaattgatgaatggaagataagaggatgaaaagatgaagatactggaaatggaatagagtcgtatatttgaatgtttgagtttgactg |
34889920 |
T |
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