View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10044_6 (Length: 378)

Name: NF10044_6
Description: NF10044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10044_6
NF10044_6
[»] chr4 (24 HSPs)
chr4 (1-73)||(26205304-26205376)
chr4 (127-256)||(53261101-53261232)
chr4 (204-258)||(30023640-30023694)
chr4 (138-178)||(9712943-9712983)
chr4 (138-186)||(54223580-54223628)
chr4 (128-250)||(44022953-44023079)
chr4 (127-235)||(54613048-54613156)
chr4 (138-256)||(6607407-6607526)
chr4 (127-186)||(31846874-31846934)
chr4 (137-184)||(22435378-22435425)
chr4 (127-182)||(32224300-32224355)
chr4 (137-168)||(35297495-35297526)
chr4 (126-168)||(337041-337083)
chr4 (127-184)||(32008321-32008379)
chr4 (136-186)||(49469971-49470021)
chr4 (130-240)||(53937918-53938031)
chr4 (217-259)||(54223561-54223603)
chr4 (138-249)||(34025461-34025574)
chr4 (126-198)||(38219149-38219222)
chr4 (164-243)||(24425248-24425328)
chr4 (138-186)||(31012154-31012202)
chr4 (219-255)||(42756296-42756332)
chr4 (217-253)||(46321359-46321395)
chr4 (143-199)||(48717009-48717065)
[»] chr1 (16 HSPs)
chr1 (127-267)||(10449448-10449590)
chr1 (130-259)||(44938803-44938934)
chr1 (139-267)||(15928074-15928204)
chr1 (127-267)||(44801752-44801895)
chr1 (128-176)||(26011735-26011784)
chr1 (123-168)||(44382435-44382480)
chr1 (138-198)||(50754751-50754811)
chr1 (129-267)||(39128206-39128345)
chr1 (127-186)||(9379833-9379893)
chr1 (127-186)||(9884856-9884916)
chr1 (138-198)||(28739384-28739444)
chr1 (232-267)||(9379949-9379984)
chr1 (232-267)||(28045450-28045485)
chr1 (232-267)||(50754855-50754890)
chr1 (217-259)||(28739421-28739463)
chr1 (136-169)||(32787128-32787161)
[»] chr8 (4 HSPs)
chr8 (119-241)||(7931550-7931674)
chr8 (130-264)||(33763461-33763597)
chr8 (127-243)||(31470760-31470878)
chr8 (138-180)||(43465113-43465155)
[»] chr5 (11 HSPs)
chr5 (129-255)||(12605573-12605701)
chr5 (138-198)||(42772036-42772096)
chr5 (127-186)||(1839986-1840046)
chr5 (138-186)||(7137668-7137716)
chr5 (127-186)||(29385368-29385428)
chr5 (230-261)||(1839968-1839999)
chr5 (217-259)||(896277-896319)
chr5 (138-236)||(4376381-4376474)
chr5 (143-184)||(5998615-5998656)
chr5 (217-254)||(22097491-22097528)
chr5 (138-186)||(9177928-9177976)
[»] chr3 (15 HSPs)
chr3 (138-259)||(29081626-29081749)
chr3 (123-267)||(48342787-48342933)
chr3 (149-264)||(36738299-36738416)
chr3 (127-264)||(20286919-20287058)
chr3 (135-267)||(32385358-32385492)
chr3 (138-267)||(22893892-22894030)
chr3 (138-267)||(31342034-31342164)
chr3 (137-184)||(16205735-16205782)
chr3 (127-198)||(48342232-48342303)
chr3 (217-259)||(22894007-22894049)
chr3 (138-186)||(11512414-11512462)
chr3 (204-255)||(28309087-28309138)
chr3 (217-259)||(11512395-11512437)
chr3 (142-187)||(28695350-28695395)
chr3 (230-266)||(41410500-41410536)
[»] chr6 (10 HSPs)
chr6 (135-267)||(16193754-16193887)
chr6 (131-267)||(28581732-28581870)
chr6 (138-186)||(369502-369550)
chr6 (217-267)||(369527-369577)
chr6 (232-267)||(2543736-2543771)
chr6 (138-169)||(5981557-5981588)
chr6 (217-259)||(2543851-2543893)
chr6 (138-168)||(5981629-5981659)
chr6 (138-183)||(178661-178706)
chr6 (144-243)||(35049771-35049872)
[»] chr2 (10 HSPs)
chr2 (127-240)||(5913540-5913653)
chr2 (138-267)||(7755363-7755493)
chr2 (127-186)||(39819078-39819138)
chr2 (232-267)||(12918664-12918699)
chr2 (232-267)||(39819194-39819229)
chr2 (217-259)||(7755344-7755386)
chr2 (221-259)||(13421801-13421839)
chr2 (217-267)||(34563356-34563406)
chr2 (138-191)||(12918560-12918613)
chr2 (137-178)||(18182591-18182632)
[»] scaffold0343 (2 HSPs)
scaffold0343 (131-186)||(12290-12345)
scaffold0343 (230-267)||(12227-12264)
[»] chr7 (15 HSPs)
chr7 (127-198)||(24532765-24532836)
chr7 (139-186)||(42901381-42901429)
chr7 (149-266)||(25099252-25099369)
chr7 (149-264)||(29407496-29407613)
chr7 (137-191)||(48583311-48583365)
chr7 (138-186)||(46282895-46282944)
chr7 (138-186)||(7211887-7211935)
chr7 (138-186)||(17272726-17272774)
chr7 (232-267)||(29681904-29681939)
chr7 (137-183)||(6980943-6980989)
chr7 (217-259)||(7211868-7211910)
chr7 (217-259)||(17272707-17272749)
chr7 (232-266)||(17272830-17272864)
chr7 (217-259)||(32315807-32315849)
chr7 (137-178)||(42494798-42494839)
[»] scaffold0001 (1 HSPs)
scaffold0001 (138-240)||(507743-507847)
[»] scaffold1315 (1 HSPs)
scaffold1315 (204-259)||(1821-1876)
[»] scaffold1293 (1 HSPs)
scaffold1293 (204-259)||(195-250)
[»] scaffold0110 (1 HSPs)
scaffold0110 (127-255)||(26512-26642)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26205376 - 26205304
Alignment:
Q  1 cttactttgatgagtcttcgaagccaacccacctaaagttttaagtatagatggaccgtacatggacccaaat 73  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26205376 cttactttgatgagtcttcaaagccaacccacctaaagttttaagtatagatggaccgtacatggacccaaat 26205304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 53261232 - 53261101
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggc-tttcttctttctcttttataacat-ttttacttctttgtacacttacgacattgt 224  Q
    ||||||||||||||| |||| ||||||| || |||||||||||| ||||||||||||||||  |||  | ||||  ||  || ||||| |  ||||||||    
T  53261232 ttggtgacattgtgatattggccaaccataacatcacaagtggcttttcttctttctctttcctaaggtctttttgtttgttatacacatgtgacattgt 53261133  T
Q  225 agttgatcaatgtcaccaaccacaatgtcacc 256  Q
     |||| ||||||||||||||||||||||||||    
T  53261132 ggttggtcaatgtcaccaaccacaatgtcacc 53261101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 30023640 - 30023694
Alignment:
Q  204 tttgtacacttacgacattgtagttgatcaatgtcaccaaccacaatgtcaccca 258  Q
    |||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  30023640 tttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcaccca 30023694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 9712983 - 9712943
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttct 178  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  9712983 gtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 54223580 - 54223628
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    ||||||||||||||||||||| |||||| || |||||||||||||||||    
T  54223580 gtgacattgaccaaccacaatgtcacaaatgtctttcttctttctcttt 54223628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 44023079 - 44022953
Alignment:
Q  128 tggtgacatt-gtgacattgaccaaccacaatatcacaagtggctttcttc-tttctcttttataacattttt--acttctttgtacacttacgacattg 223  Q
    |||||||||| ||||||||||||||||||||| | ||||||| |||| ||  |||| |||| |||| ||||||  | || ||  |||||||   ||||||    
T  44023079 tggtgacattagtgacattgaccaaccacaatgttacaagtgactttttttatttcactttcataagatttttttattttttaatacacttgttacattg 44022980  T
Q  224 tagttgatcaatgtcaccaaccacaat 250  Q
    ||||||||||||||||||||| |||||    
T  44022979 tagttgatcaatgtcaccaactacaat 44022953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 54613048 - 54613156
Alignment:
Q  127 ttggtgacatt-gtgacattgaccaaccacaatatcacaagtggcttt-cttctttctcttttataacatttttacttctttgtacacttacgacattgt 224  Q
    ||||||||||| ||| ||||||||||||||||| |||  |||| |||| ||||||||||||| |||| ||||||  || ||| |||||||  ||||||||    
T  54613048 ttggtgacattagtggcattgaccaaccacaatgtca--agtgacttttcttctttctctttaataagattttttgttttttatacacttgtgacattgt 54613145  T
Q  225 agttgatcaat 235  Q
    |||||| ||||    
T  54613146 agttgaccaat 54613156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 6607526 - 6607407
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttacgacattgtagttgatcaat 235  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||| ||||| | || |  |||||  |  |||| ||||||   ||||||| |||| | |||    
T  6607526 gtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggt-aat 6607428  T
Q  236 gtcaccaaccacaatgtcacc 256  Q
    |||||||||||||||||||||    
T  6607427 gtcaccaaccacaatgtcacc 6607407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 31846934 - 31846874
Alignment:
Q  127 ttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||||||||| ||| |||| ||||||||||| ||||| ||||||||||||||| |||||    
T  31846934 ttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttcttt 31846874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 22435378 - 22435425
Alignment:
Q  137 tgtgacattgaccaaccacaatatcacaagtggctttcttctttctct 184  Q
    |||||||||| | ||||||||| ||||||||||||||||||| |||||    
T  22435378 tgtgacattggcaaaccacaatgtcacaagtggctttcttctctctct 22435425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 32224300 - 32224355
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttct 182  Q
    ||||||| ||||||||||||| |||| ||||| ||||||||  |||||||||||||    
T  32224300 ttggtgatattgtgacattgatcaactacaatgtcacaagtatctttcttctttct 32224355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 35297495 - 35297526
Alignment:
Q  137 tgtgacattgaccaaccacaatatcacaagtg 168  Q
    ||||||||||||||||||||||||||||||||    
T  35297495 tgtgacattgaccaaccacaatatcacaagtg 35297526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 337083 - 337041
Alignment:
Q  126 tttggtgacattgtgacattgaccaaccacaatatcacaagtg 168  Q
    |||||| |||||||||||||||||||||||||| ||| |||||    
T  337083 tttggtaacattgtgacattgaccaaccacaatgtcaaaagtg 337041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 32008379 - 32008321
Alignment:
Q  127 ttggtgacatt-gtgacattgaccaaccacaatatcacaagtggctttcttctttctct 184  Q
    ||||||||||| |||| |||||||||||| ||| | ||||||| |||||||||||||||    
T  32008379 ttggtgacattagtgatattgaccaaccaaaatgttacaagtgtctttcttctttctct 32008321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 49470021 - 49469971
Alignment:
Q  136 ttgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||| |||||| ||||||||||||||||||| |||| |||| |||||||    
T  49470021 ttgtgatattgacgaaccacaatatcacaagtgacttttttctctctcttt 49469971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 53937918 - 53938031
Alignment:
Q  130 gtgacatt-gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttacgacattgtag 226  Q
    |||||||| |||| |||||||||||||||| ||||||||  ||||||| | ||||||||| || |  |||||  || |||  |||||| ||||||||| |    
T  53937918 gtgacattagtgatattgaccaaccacaatgtcacaagtaactttcttatgtctcttttacaatattttttttgtttttttaacacttgcgacattgtgg 53938017  T
Q  227 ttgatcaatgtcac 240  Q
    ||| ||||||||||    
T  53938018 ttggtcaatgtcac 53938031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 54223603 - 54223561
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| |||| |||||||||||||||||||||||| ||||    
T  54223603 gacattgtggttggtcaatgtcaccaaccacaatgtcatccaa 54223561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 34025461 - 34025574
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctctttta-taacatttttacttctttgtacacttacg-acattgtagttgatcaat 235  Q
    |||||||||| |||||| ||||||| || ||||||| |||||||||||| |  ||  |||||| || ||| |||||||| | | ||||| ||||| ||||    
T  34025461 gtgacattgatcaaccataatatcataaatggcttttttctttctctttcacaaatttttttatttttttttacacttatgaatattgtggttgaccaat 34025560  T
Q  236 gtcaccaaccacaa 249  Q
    |||| |||||||||    
T  34025561 gtcaacaaccacaa 34025574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 38219222 - 38219149
Alignment:
Q  126 tttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacattttt 198  Q
    |||| |||||||| ||| ||||| |||| ||||| | ||||||| ||||||||||||||||||| || ||||||    
T  38219222 tttgttgacattgatgatattgatcaactacaatgttacaagtgactttcttctttctcttttacaagattttt 38219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 24425328 - 24425248
Alignment:
Q  164 aagtggctttcttctttctcttttataac-atttttacttctttgtacacttacgacattgtagttgatcaatgtcaccaa 243  Q
    ||||| ||||||||||||||||| ||||  || |||  || ||||||||| || |||||| | ||||||||||||||||||    
T  24425328 aagtgactttcttctttctctttcataaggatattttattttttgtacacctatgacattatggttgatcaatgtcaccaa 24425248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 31012154 - 31012202
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    ||||||||||||||||||||| ||||| ||| |||| |||||| |||||    
T  31012154 gtgacattgaccaaccacaatgtcacatgtgacttttttctttttcttt 31012202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 42756296 - 42756332
Alignment:
Q  219 cattgtagttgatcaatgtcaccaaccacaatgtcac 255  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  42756296 cattgtggttgatcaaagtcaccaaccacaatgtcac 42756332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 46321395 - 46321359
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtc 253  Q
    |||||||| || |||||||||||||||||||||||||    
T  46321395 gacattgtggtcgatcaatgtcaccaaccacaatgtc 46321359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 48717065 - 48717009
Alignment:
Q  143 attgaccaaccacaatatcacaagtggctttcttctttctcttttataacattttta 199  Q
    ||||||| |||||||| | ||||||||||||||||| ||||||| | || |||||||    
T  48717065 attgaccgaccacaatcttacaagtggctttcttctctctctttcagaagattttta 48717009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 10449590 - 10449448
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttac--ttctttgtacacttacgacattgt 224  Q
    ||||||||||||||||||||  |||||||||| |||||| |  ||||||||||||||||| | || ||||||    ||||||||||||||  ||||||||    
T  10449590 ttggtgacattgtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttttgtttctttgtacacttgtgacattgt 10449491  T
Q  225 agttgatcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
     |||| ||||||||||||||||||||||||||||| |||||||    
T  10449490 ggttggtcaatgtcaccaaccacaatgtcacccaagtattatc 10449448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 259
Target Start/End: Complemental strand, 44938934 - 44938803
Alignment:
Q  130 gtgacatt-gtgacattgaccaaccacaatatcacaagtggctttcttctttctctttta-taacatttttacttctttgtacacttacgacattgtagt 227  Q
    |||||||| |||||||||| ||||||||||   ||||||||||||||||||||||||| |  ||  |||||| || |||||||||||  |||||| | ||    
T  44938934 gtgacattagtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaaagttttttaattttttgtacacttgtgacattctggt 44938835  T
Q  228 tgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    || |||||||||| ||||||||||||||||||    
T  44938834 tggtcaatgtcactaaccacaatgtcacccaa 44938803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 15928204 - 15928074
Alignment:
Q  139 tgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttacttct---ttgtacacttacgacattgtagttgatcaat 235  Q
    |||||||| ||||||||||| ||||| ||||||||||||||| ||||| | || ||||||  |  |   ||||||||||   ||||||| |||||| |||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgat-aat 15928106  T
Q  236 gtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||| ||||||||||||||| |||||||    
T  15928105 gtcaccaatcacaatgtcacccaagtattatc 15928074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 44801895 - 44801752
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca---tttttacttctttgtacac-ttacgacatt 222  Q
    ||||||||||||| || ||||||||||| |||||||||| || ||||||||||||||||| | || |   |||||  || ||||||||| ||  ||||||    
T  44801895 ttggtgacattgt-acgttgaccaaccataatatcacaaatgtctttcttctttctctttcacaatattttttttgtttttttgtacactttgtgacatt 44801797  T
Q  223 gtagttgatcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
    || ||||  |||||||| |||||||||| ||||| || |||||||    
T  44801796 gtggttggccaatgtcatcaaccacaatatcacctaagtattatc 44801752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 26011784 - 26011735
Alignment:
Q  128 tggtgacattg-tgacattgaccaaccacaatatcacaagtggctttctt 176  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  26011784 tggtgacattggtgacattgaccaaccacaatataacaagtggctttctt 26011735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 44382480 - 44382435
Alignment:
Q  123 cactttggtgacattgtgacattgaccaaccacaatatcacaagtg 168  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  44382480 cacttgggtgacattgtgacattggccaaccacaatatcacaagtg 44382435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 50754751 - 50754811
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacattttt 198  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| ||||||| || ||||||    
T  50754751 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagattttt 50754811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 267
Target Start/End: Original strand, 39128206 - 39128345
Alignment:
Q  129 ggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacat-ttttacttctttgtacacttacgacattgtagt 227  Q
    ||||||||||||| |||||||||| ||||||| |||| || ||||||||| ||||||| |||| || ||||  || ||| || ||||   | ||||| ||    
T  39128206 ggtgacattgtgatattgaccaacaacaatattacaaatgtctttcttctatctctttcataatatattttcattttttttatacttgtaatattgtggt 39128305  T
Q  228 tgatcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
    ||| | |||||| ||||| |||||| |||||| |||||||    
T  39128306 tgaccgatgtcatcaaccccaatgttacccaagtattatc 39128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 9379833 - 9379893
Alignment:
Q  127 ttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||||||||| ||| |||| ||||||||||| ||||| ||||||||||||||| |||||    
T  9379833 ttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttcttt 9379893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 9884856 - 9884916
Alignment:
Q  127 ttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||||||||| ||||||||  |||||||||| ||||| ||||||||||||||| |||||    
T  9884856 ttggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttctttttcttt 9884916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 28739444 - 28739384
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacattttt 198  Q
    ||||||||| ||||||||||| ||||| |||||||| |||||| ||||||| || ||||||    
T  28739444 gtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagattttt 28739384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 9379949 - 9379984
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||||| |||||||    
T  9379949 caatgtcaccaaccacaatgtcacccaaatattatc 9379984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 28045450 - 28045485
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||||| |||||||    
T  28045450 caatgtcaccaaccacaatgtcacccaagtattatc 28045485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 50754855 - 50754890
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||||| |||||||    
T  50754855 caatgtcaccaaccacaatgtcacccaagtattatc 50754890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 28739421 - 28739463
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  28739421 gacattgtggttggccaatgtcaccaaccacaatgtcacccaa 28739463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 32787161 - 32787128
Alignment:
Q  136 ttgtgacattgaccaaccacaatatcacaagtgg 169  Q
    |||||||||||||||| |||||||||||||||||    
T  32787161 ttgtgacattgaccaatcacaatatcacaagtgg 32787128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 7931674 - 7931550
Alignment:
Q  119 gtaacactttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttac 216  Q
    ||||||||| |||||||||||||||||| | ||||||||| |||||| || ||||||||||||||||| |||| |  |||||  ||||||||||||||      
T  7931674 gtaacacttgggtgacattgtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttttgtttctttgtacacttgt 7931575  T
Q  217 gacattgtagttgatcaatgtcacc 241  Q
    |||||||| |||| |||||||||||    
T  7931574 gacattgtggttggtcaatgtcacc 7931550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 33763597 - 33763461
Alignment:
Q  130 gtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttac--ttctttgtacacttacgacattgtagt 227  Q
    |||||| ||||||||||  |||| ||||||||||||||| ||||||||||| ||||| |||| ||||||    |||||| |||| ||   | ||||| ||    
T  33763597 gtgacactgtgacattggtcaactacaatatcacaagtgcctttcttctttttctttcataatatttttttgtttctttatacatttgtaatattgtggt 33763498  T
Q  228 tgatcaatgtcaccaaccacaatgtcacccaattatt 264  Q
    ||| |||||||||||||||||||||||||||||||||    
T  33763497 tgaccaatgtcaccaaccacaatgtcacccaattatt 33763461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 31470760 - 31470878
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttacgacattgt 224  Q
    ||||| |||||||||||||||||||||||||| ||||||||  | ||||||||| ||||| | || |  |||||  ||||||||||||||  ||||||||    
T  31470760 ttggtaacattgtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtttctttgtacacttgtgacattgt 31470859  T
Q  225 agttgatcaatgtcaccaa 243  Q
     ||||  ||||||||||||    
T  31470860 ggttggccaatgtcaccaa 31470878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 43465113 - 43465155
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttcttt 180  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  43465113 gtgacattggccaaccacaatatcacatgtggctttcttcttt 43465155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 12605573 - 12605701
Alignment:
Q  129 ggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttata--acatttttacttctttgtacacttacgacattgtag 226  Q
    ||||||||||||||||||| |||||| ||| ||||| ||| |||||||||||| |||| | |  ||||||||  |||||||||||| |  |||||||| |    
T  12605573 ggtgacattgtgacattgatcaaccataatgtcacatgtgtctttcttctttcactttcacagtacatttttgtttctttgtacacgtgtgacattgtgg 12605672  T
Q  227 ttgatcaatgtcaccaaccacaatgtcac 255  Q
    |||| ||||||||||||||||||||||||    
T  12605673 ttgaccaatgtcaccaaccacaatgtcac 12605701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 42772096 - 42772036
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacattttt 198  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||| ||||||    
T  42772096 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctttttcataatattttt 42772036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 1839986 - 1840046
Alignment:
Q  127 ttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  1839986 ttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 1840046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 7137668 - 7137716
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  7137668 gtgacattgaccaaccacaatgtcacaagtgactttcttcattctcttt 7137716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 29385428 - 29385368
Alignment:
Q  127 ttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  29385428 ttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 29385368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 1839999 - 1839968
Alignment:
Q  230 atcaatgtcaccaaccacaatgtcacccaatt 261  Q
    ||||||||||||||||||||||||||||||||    
T  1839999 atcaatgtcaccaaccacaatgtcacccaatt 1839968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 896319 - 896277
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| |||||||||| |||||||||||||| ||||||||    
T  896319 gacattgtggttgatcaatatcaccaaccacaatctcacccaa 896277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 4376474 - 4376381
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttacttctttgtacacttacgacattgtagttgatcaatg 236  Q
    |||||| |||||||| ||||| |||||| ||| |||||||||||||||| ||||  |||||     |||||||||||  |||||||| ||||| |||||    
T  4376474 gtgacaatgaccaacaacaatgtcacaaatggttttcttctttctctttcataagtttttt-----tttgtacacttgtgacattgtggttgaccaatg 4376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 5998656 - 5998615
Alignment:
Q  143 attgaccaaccacaatatcacaagtggctttcttctttctct 184  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  5998656 attggccaaccacaatatcacaagtgactttcttcttcctct 5998615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 22097491 - 22097528
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtca 254  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  22097491 gacattgtagttgaccaatgtcaccaactacaatgtca 22097528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 9177976 - 9177928
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||| |||| ||||||||||||||||| ||| ||||||||||| |||||    
T  9177976 gtgatattggccaaccacaatatcacatgtgactttcttctttttcttt 9177928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 29081626 - 29081749
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataa--catttttacttctttgtacacttacgacattgtagttgatcaat 235  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||    |||||  || |||||||||||  |||||||| ||||| ||||    
T  29081626 gtgacattgaccaaccacaatgtcacaagtagctttcttctttctttttcataaagtttttttttttttttgtacacttgtgacattgtggttgaccaat 29081725  T
Q  236 gtcaccaaccacaatgtcacccaa 259  Q
    ||||||||||||||| ||||||||    
T  29081726 gtcaccaaccacaatatcacccaa 29081749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 267
Target Start/End: Complemental strand, 48342933 - 48342787
Alignment:
Q  123 cactttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttacgaca 220  Q
    ||||| |||||||||||||||||  ||||| ||||| ||||| ||| |||||||| |||||||||| || |  |||||  ||||||||||| ||  ||||    
T  48342933 cacttgggtgacattgtgacattagccaacgacaatgtcacatgtgtctttcttcattctcttttacaatatttttttgtttctttgtacatttgtgaca 48342834  T
Q  221 ttgtagttgatcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||| ||||| ||||||| ||||||| |||||||||||| |||||||    
T  48342833 ttgtggttgaccaatgtcgccaaccataatgtcacccaagtattatc 48342787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 36738299 - 36738416
Alignment:
Q  149 caaccacaatatcacaagtggctttcttctttctcttttataacatttttac--ttctttgtacacttacgacattgtagttgatcaatgtcaccaacca 246  Q
    |||||||||||||||||||| ||||||||||||| ||| | || ||||||    || ||| |||||||| || ||||||||||| |||||||||||||||    
T  36738299 caaccacaatatcacaagtgtctttcttctttctttttcacaatatttttttgtttatttatacacttatgatattgtagttgaccaatgtcaccaacca 36738398  T
Q  247 caatgtcacccaattatt 264  Q
    ||||||||||||| ||||    
T  36738399 caatgtcacccaaatatt 36738416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 20286919 - 20287058
Alignment:
Q  127 ttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttttata--acatttttacttctttgtacacttacgacattg 223  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| ||||||| |  || |||||  |  |||| ||||||   ||||||    
T  20286919 ttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattg 20287018  T
Q  224 tagttgatcaatgtcaccaaccacaatgtcacccaattatt 264  Q
    | |||| | ||||||||||||||||||||||||||| ||||    
T  20287019 tggttggt-aatgtcaccaaccacaatgtcacccaaatatt 20287058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 32385492 - 32385358
Alignment:
Q  135 attgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacattt--ttacttctttgtacacttacgacattgtagttgatc 232  Q
    ||||||| |||| ||||||||||| | | |||||  |||||||||||||||| | || ||||  ||  || |||||||||||   ||||||| ||||| |    
T  32385492 attgtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaatatttatttgtttatttgtacacttgtcacattgtggttgacc 32385393  T
Q  233 aatgtcaccaaccacaatgtcacccaattattatc 267  Q
    ||||||||||| ||||||||||||||| |||||||    
T  32385392 aatgtcaccaatcacaatgtcacccaaatattatc 32385358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 22894030 - 22893892
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttactt-ctttgtacacttacgacattgtagttg------- 229  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||| | || ||||||  ||  |||||||||||   ||||||| ||||           
T  22894030 gtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagattttttgttgttttgtacacttgtaacattgtggttggtaatgt 22893931  T
Q  230 -atcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
     | |||||||||||||||||||||||||||| |||||||    
T  22893930 caccaatgtcaccaaccacaatgtcacccaagtattatc 22893892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 31342034 - 31342164
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttacttc--tttgtacacttacgacattgtagttgatcaat 235  Q
    ||||||||| ||||||||||| ||||| || |||||||||||| ||||| | || ||||||   |   |||| ||||||   ||||||| |||| | |||    
T  31342034 gtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggt-aat 31342132  T
Q  236 gtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||| |||||||    
T  31342133 gtcaccaaccacaatgtcacccaaatattatc 31342164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 16205735 - 16205782
Alignment:
Q  137 tgtgacattgaccaaccacaatatcacaagtggctttcttctttctct 184  Q
    ||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  16205735 tgtgacattgatcaaccacaatgtcacaagtggctttcttcttactct 16205782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 48342232 - 48342303
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacattttt 198  Q
    |||||||||||||||||||  |||||||||||  |||| ||| |||||||| |||||||||| || ||||||    
T  48342232 ttggtgacattgtgacattagccaaccacaatgccacatgtgtctttcttcattctcttttacaatattttt 48342303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 22894007 - 22894049
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| |||| |||||||||||||||||||||||||||||    
T  22894007 gacattgtggttggtcaatgtcaccaaccacaatgtcacccaa 22894049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 11512414 - 11512462
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  11512414 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 11512462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 28309138 - 28309087
Alignment:
Q  204 tttgtacacttacgacattgtagttgatcaatgtcaccaaccacaatgtcac 255  Q
    |||||||||||  || ||||| |||||||||||||| |||||||||||||||    
T  28309138 tttgtacacttgtgatattgtggttgatcaatgtcatcaaccacaatgtcac 28309087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 11512437 - 11512395
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  11512437 gacattgtggttggccaatgtcaccaaccacaatgtcacccaa 11512395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 28695350 - 28695395
Alignment:
Q  142 cattgaccaaccacaatatcacaagtggctttcttctttctctttt 187  Q
    ||||||||||||||||| |||||| |||||||||||  ||||||||    
T  28695350 cattgaccaaccacaatgtcacaaatggctttcttcactctctttt 28695395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 41410536 - 41410500
Alignment:
Q  230 atcaatgtcaccaaccacaatgtcacccaattattat 266  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  41410536 atcaatgtcaccaaccataatgtcacccaaatattat 41410500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 16193754 - 16193887
Alignment:
Q  135 attgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttacttcttt-gtacacttacgacattgtagttgatca 233  Q
    ||||||| |||| |||| |||||| ||||||||| |||||||||||||| || | || ||||||  |  ||| ||||||||  |||||||| ||||| ||    
T  16193754 attgtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatattttttttagttttgtacacttgtgacattgtggttgacca 16193853  T
Q  234 atgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||| |||||||    
T  16193854 atgtcaccaaccacaatgtcacccaagtattatc 16193887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 28581870 - 28581732
Alignment:
Q  131 tgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttacgacattgtagtt 228  Q
    ||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||| | || |  |||||  || ||  || ||||| |||||||| |||    
T  28581870 tgacattgtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaatatttttttgttttttcatatacttatgacattgtggtt 28581771  T
Q  229 gatcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |  ||||||||||||||||||||||| |||| |||||||    
T  28581770 ggccaatgtcaccaaccacaatgtcagccaagtattatc 28581732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 369550 - 369502
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  369550 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctcttt 369502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 369527 - 369577
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||| |||| ||||||||||||||||||||||||| ||| |||||||    
T  369527 gacattgtggttggtcaatgtcaccaaccacaatgtcactcaagtattatc 369577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 2543771 - 2543736
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||||| |||||||    
T  2543771 caatgtcaccaaccacaatgtcacccaagtattatc 2543736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 169
Target Start/End: Original strand, 5981557 - 5981588
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtgg 169  Q
    ||||||||||||||||||||||||||||||||    
T  5981557 gtgacattgaccaaccacaatatcacaagtgg 5981588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 2543851 - 2543893
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  2543851 gacattgtggttggccaatgtcaccaaccacaatgtcacccaa 2543893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 168
Target Start/End: Complemental strand, 5981659 - 5981629
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtg 168  Q
    |||||||||||||||||||||||||||||||    
T  5981659 gtgacattgaccaaccacaatatcacaagtg 5981629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 178661 - 178706
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctc 183  Q
    |||||||||| |||||||||| ||||| ||||||||||||| ||||    
T  178661 gtgacattgatcaaccacaatgtcacatgtggctttcttctctctc 178706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 35049771 - 35049872
Alignment:
Q  144 ttgaccaaccacaatatcacaagtggc-tttcttctttctcttttataacatt-tttacttctttgtacacttacgacattgtagttgatcaatgtcacc 241  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||| ||||  || |||  || |||||||||||  |||||||| |||| | || ||||||    
T  35049771 ttgaccaaccacaatattacaagtggcttttcttctttttctttcataaggttcttttattttttgtacacttgtgacattgtggttggtaaacgtcacc 35049870  T
Q  242 aa 243  Q
    ||    
T  35049871 aa 35049872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 5913540 - 5913653
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacatttttacttctttgtacacttacgacattgtag 226  Q
    |||||||||||||||||||| ||||||||||| | |||| || ||||||||||||||||| |  |  |||||| ||||||||||| ||  |||||||| |    
T  5913540 ttggtgacattgtgacattggccaaccacaatcttacaaatgtctttcttctttctctttcactatttttttatttctttgtacaattgtgacattgtcg 5913639  T
Q  227 ttgatcaatgtcac 240  Q
    ||| ||||||||||    
T  5913640 ttggtcaatgtcac 5913653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 7755363 - 7755493
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttacgacattgtagttgatcaat 235  Q
    ||||||||| ||||||||||| |||||||||||||| |||||| ||||| | || |  |||||  |  |||||||||||   |||||||  ||| | |||    
T  7755363 gtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttgtacacttgtaacattgtgattggt-aat 7755461  T
Q  236 gtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||| |||||||    
T  7755462 gtcaccaaccacaatgtcacccaaatattatc 7755493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 39819078 - 39819138
Alignment:
Q  127 ttggtgacattg-tgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  39819078 ttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 39819138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 12918664 - 12918699
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||||| |||||||    
T  12918664 caatgtcaccaaccacaatgtcacccaagtattatc 12918699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 39819194 - 39819229
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||||| |||||||    
T  39819194 caatgtcaccaaccacaatgtcacccaagtattatc 39819229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 7755386 - 7755344
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  7755386 gacattgtggttggccaatgtcaccaaccacaatgtcacccaa 7755344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 13421801 - 13421839
Alignment:
Q  221 ttgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  13421801 ttgtggttggtcaatgtcaccaaccacaatgtcacccaa 13421839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 34563356 - 34563406
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
    ||||||| ||||| ||||||||||||||||| |||||||| || |||||||    
T  34563356 gacattgaagttggtcaatgtcaccaaccacgatgtcaccaaagtattatc 34563406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 12918560 - 12918613
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataa 191  Q
    ||||||||| ||||||||||| ||||| |||||||| |||||| ||||| ||||    
T  12918560 gtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataa 12918613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 18182632 - 18182591
Alignment:
Q  137 tgtgacattgaccaaccacaatatcacaagtggctttcttct 178  Q
    |||||||||| | ||||||||| |||||||||||||||||||    
T  18182632 tgtgacattggcaaaccacaatgtcacaagtggctttcttct 18182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 12345 - 12290
Alignment:
Q  131 tgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  12345 tgacattgtgacattgaccaaccacaatgtcacaagtgtccttcttctttctcttt 12290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 12264 - 12227
Alignment:
Q  230 atcaatgtcaccaaccacaatgtcacccaattattatc 267  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  12264 atcaatgtcaccaactacaatgtcacccaagtattatc 12227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 24532836 - 24532765
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacattttt 198  Q
    ||||||||| ||||||||||| |||||||||| ||||||||| | |||||||||||||||||| | ||||||    
T  24532836 ttggtgacactgtgacattgatcaaccacaatgtcacaagtgtccttcttctttctcttttatgatattttt 24532765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 42901381 - 42901429
Alignment:
Q  139 tgacattgaccaaccacaatatcacaagtggc-tttcttctttctcttt 186  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42901381 tgacattgaccaaccacaatatcacaagtggcttttcttctttctcttt 42901429  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 25099369 - 25099252
Alignment:
Q  149 caaccacaatatcacaagtggctttcttctttctcttttataacatttt-tacttctttgtacacttacgacattgtagttgatcaatgtcaccaaccac 247  Q
    |||||||||| ||||||||| ||||||||||| ||||| | || ||||| || ||||||||||||||  |||| |||||||| | |||  |||||| |||    
T  25099369 caaccacaatgtcacaagtgtctttcttctttttctttcacaatattttgtatttctttgtacacttgtgacaatgtagttggt-aataccaccaagcac 25099271  T
Q  248 aatgtcacccaattattat 266  Q
    ||| |||||||| ||||||    
T  25099270 aatatcacccaaatattat 25099252  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 29407613 - 29407496
Alignment:
Q  149 caaccacaatatcacaagtggctttcttctttctcttttataacatttttac--ttctttgtacacttacgacattgtagttgatcaatgtcaccaacca 246  Q
    |||| ||||| |||||| || ||||||||||||||||| | || ||||||    ||||||||||||||| |||||||||||||  |||| ||||| || |    
T  29407613 caactacaatgtcacaactgtctttcttctttctctttcacaatatttttttgtttctttgtacacttatgacattgtagttggccaatatcaccgacga 29407514  T
Q  247 caatgtcacccaattatt 264  Q
    |||| |||||||| ||||    
T  29407513 caatatcacccaagtatt 29407496  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 48583311 - 48583365
Alignment:
Q  137 tgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataa 191  Q
    |||||||||| ||||||||||||| |||||||| | | |||||||||||||||||    
T  48583311 tgtgacattggccaaccacaatataacaagtggttgttttctttctcttttataa 48583365  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 46282895 - 46282944
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtgg-ctttcttctttctcttt 186  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  46282895 gtgacattggccaaccacaatatcacaagtggtttttcttctttctcttt 46282944  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 7211887 - 7211935
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  7211887 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 7211935  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 17272726 - 17272774
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttt 186  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  17272726 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 17272774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 29681904 - 29681939
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattatc 267  Q
    |||||||||||||||||||||||||||| |||||||    
T  29681904 caatgtcaccaaccacaatgtcacccaagtattatc 29681939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 6980989 - 6980943
Alignment:
Q  137 tgtgacattgaccaaccacaatatcacaagtggctttcttctttctc 183  Q
    |||||||||| ||||||||||| | ||||||||||||||||| ||||    
T  6980989 tgtgacattggccaaccacaatgttacaagtggctttcttctctctc 6980943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 7211910 - 7211868
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  7211910 gacattgtggttggccaatgtcaccaaccacaatgtcacccaa 7211868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 17272749 - 17272707
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  17272749 gacattgtggttggccaatgtcaccaaccacaatgtcacccaa 17272707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 17272830 - 17272864
Alignment:
Q  232 caatgtcaccaaccacaatgtcacccaattattat 266  Q
    |||||||||||||||||||||||||||| ||||||    
T  17272830 caatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 32315807 - 32315849
Alignment:
Q  217 gacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||||||||| ||||||||||||||||||| | ||||||    
T  32315807 gacattgtagttgaccaatgtcaccaaccacaatttgacccaa 32315849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 42494798 - 42494839
Alignment:
Q  137 tgtgacattgaccaaccacaatatcacaagtggctttcttct 178  Q
    |||||||||| | ||||||||| |||||||||||||||||||    
T  42494798 tgtgacattggcaaaccacaatgtcacaagtggctttcttct 42494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 507743 - 507847
Alignment:
Q  138 gtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataaca--tttttacttctttgtacacttacgacattgtagttgatcaat 235  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||||| | || |  |||||| | ||||||| ||||| |||||||| || || ||||    
T  507743 gtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaagatttttttattgctttgtatacttatgacattgtggtcgaccaat 507842  T
Q  236 gtcac 240  Q
    |||||    
T  507843 gtcac 507847  T

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Target: scaffold1315 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 1876 - 1821
Alignment:
Q  204 tttgtacacttacgacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||    
T  1876 tttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaa 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 195 - 250
Alignment:
Q  204 tttgtacacttacgacattgtagttgatcaatgtcaccaaccacaatgtcacccaa 259  Q
    |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||    
T  195 tttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaa 250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 26642 - 26512
Alignment:
Q  127 ttggtgacattgtgacattgaccaaccacaatatcacaagtggctttcttctttctcttttataacat--ttttacttctttgtacacttacgacattgt 224  Q
    ||||||| ||||||||||| ||||||||||  ||||||| ||  |||||||| ||| ||| | || ||  ||||  |||||| |||||||  || |||||    
T  26642 ttggtgatattgtgacatttaccaaccacagaatcacaaatgtttttcttctctctgtttcacaatatctttttgtttctttatacacttgtgatattgt 26543  T
Q  225 agttgatcaatgtcaccaaccacaatgtcac 255  Q
      |||| ||||||||||||||||||||||||    
T  26542 gtttgaccaatgtcaccaaccacaatgtcac 26512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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