View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10044_7 (Length: 351)

Name: NF10044_7
Description: NF10044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10044_7
NF10044_7
[»] chr2 (7 HSPs)
chr2 (206-342)||(28691294-28691430)
chr2 (206-332)||(28717507-28717633)
chr2 (222-342)||(28696179-28696299)
chr2 (217-294)||(28642139-28642216)
chr2 (217-294)||(28651000-28651077)
chr2 (206-269)||(28674891-28674954)
chr2 (222-282)||(28670734-28670794)
[»] chr8 (2 HSPs)
chr8 (56-206)||(14984207-14984352)
chr8 (56-167)||(37031460-37031570)
[»] chr4 (2 HSPs)
chr4 (29-167)||(5523959-5524096)
chr4 (217-269)||(41238512-41238564)
[»] chr7 (1 HSPs)
chr7 (56-167)||(25844709-25844819)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 206 - 342
Target Start/End: Complemental strand, 28691430 - 28691294
Alignment:
Q  206 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacacatgtgatccta 305  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||    
T  28691430 ggaatttcagctcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttatggtaaggaaagagtattacacacgtgatccta 28691331  T
Q  306 acatgaaagttctatatgtttctaattcaagtcttta 342  Q
    ||| ||||||| | || ||||||||||  ||||||||    
T  28691330 acaagaaagttgtttacgtttctaattatagtcttta 28691294  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 206 - 332
Target Start/End: Complemental strand, 28717633 - 28717507
Alignment:
Q  206 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacacatgtgatccta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||| ||||||| |||||||||||    
T  28717633 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttagggtaaggaaagagtattacatatgtgatccta 28717534  T
Q  306 acatgaaagttctatatgtttctaatt 332  Q
    ||| ||||||| | ||| |||||||||    
T  28717533 acaagaaagttgtttatatttctaatt 28717507  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 28696299 - 28696179
Alignment:
Q  222 ttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacacatgtgatcctaacatgaaagttctata 321  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||  | |||||| ||||| ||||| ||||| ||||| |||| ||||||| | ||    
T  28696299 ttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgccaaggtgagaaaagagtattatacatgcgatcccaacaagaaagttgttta 28696200  T
Q  322 tgtttctaattcaagtcttta 342  Q
    |||||||||||  ||||||||    
T  28696199 tgtttctaattatagtcttta 28696179  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 28642216 - 28642139
Alignment:
Q  217 tcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacac 294  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| | |||  || |||||||||||| ||||||||    
T  28642216 tcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacac 28642139  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 28651077 - 28651000
Alignment:
Q  217 tcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacac 294  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| | |||  || |||||||||||| ||||||||    
T  28651077 tcatgttttgcatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacac 28651000  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 28674954 - 28674891
Alignment:
Q  206 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatg 269  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  28674954 ggaattccaacacatattttggatgagatgatcaaaggaacttgtagatttcaccaacaagatg 28674891  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 28670794 - 28670734
Alignment:
Q  222 ttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaa 282  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| ||||||  | |||||||||    
T  28670794 ttttggatgagatgatcaatggaacttgtagatttcaccaacaagatgccaaggtgaggaa 28670734  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 14984207 - 14984352
Alignment:
Q  56 ttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaattcgtaataattcaataaaaagaaatcaa 155  Q
    |||||||| | |||||||||||| |||||  |  |||||||||||||| |||||||| | ||||| ||||||||||||| || | |  ||| |||||||     
T  14984207 ttgctttgttgtgatcgaaatcc-ttttcagcacttcaagaggtaacagtttcatcattgatcatgtcaaattcgtaatgatcctaggaaaggaaatca- 14984304  T
Q  156 aatttttaattttaatttccgctgcctttaattatcatgatttcccttcag 206  Q
       ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  14984305 ---ttttttttttaatttccgctgcctttaattatcatgatttcccttcag 14984352  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 37031570 - 37031460
Alignment:
Q  56 ttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaattcgtaataattcaataaaaagaaatcaa 155  Q
    |||||||| | |||||||||| | |||||| |  |||||||||||||||||  |||||| ||||| | ||||||||||| || |||  ||| ||||||||    
T  37031570 ttgctttgatgtgatcgaaattc-ttttctgcacttcaagaggtaacaattctatcactgatcatgttaaattcgtaatgatccaaggaaaggaaatcaa 37031472  T
Q  156 aatttttaattt 167  Q
    ||  ||||||||    
T  37031471 aaaatttaattt 37031460  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 5524096 - 5523959
Alignment:
Q  29 gtgtgaacgagtagaggcactaatattttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaatt 128  Q
    ||||| |||||||||| |  || ||| |||||||||| ||||| |||| | ||||||    |||||||||||||||||  |||||| ||||| |||||||    
T  5524096 gtgtggacgagtagagactttactatgttgctttgctgtgatcaaaattc-ttttctgtacttcaagaggtaacaattctatcactgatcatgtcaaatt 5523998  T
Q  129 cgtaataattcaataaaaagaaatcaaaatttttaattt 167  Q
    |||||| || ||| |||| |||||| ||| |||||||||    
T  5523997 cgtaatgatccaagaaaaggaaatcgaaaattttaattt 5523959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 41238512 - 41238564
Alignment:
Q  217 tcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatg 269  Q
    |||||||||||||||||||||||| |||| |||| |||||||| || ||||||    
T  41238512 tcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatg 41238564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 25844819 - 25844709
Alignment:
Q  56 ttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaattcgtaataattcaataaaaagaaatcaa 155  Q
    |||||||| | |||||||||||| |||||||   ||| |||||||||||||  |||||| ||||| ||||||||||||| || |||  ||| || |||||    
T  25844819 ttgctttgttgtgatcgaaatcc-ttttctatacttcgagaggtaacaattctatcactgatcatgtcaaattcgtaatgatccaaggaaaggagatcaa 25844721  T
Q  156 aatttttaattt 167  Q
    ||  ||||||||    
T  25844720 aaaatttaattt 25844709  T

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