View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10045_high_11 (Length: 242)
Name: NF10045_high_11
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_high_11 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13389 - 13165
Alignment:
| Q |
1 |
ccctttcacatccaatactattgggtttagcgagtggttaattatgtggatgacctgaatggataaactctgatatcatattagattttttatattgtat |
100 |
Q |
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| T |
13389 |
ccctttcacatccaatactattgggtttagcgactggttaattctgtggatgacccgaatggataaactctgatatcatattagattttttatattgtat |
13290 |
T |
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| Q |
101 |
ataattctaactctttattacaatccgacttataaggtgagatgtgccactctttataagctcttttccgacgttatcaattttcgatgtgagatttgag |
200 |
Q |
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| T |
13289 |
ataattctaactctttattacaaaccgacttataaggtgagatgtgccactctttataagctcttttccgacgttatcaattttcgatgtgagatttgag |
13190 |
T |
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| Q |
201 |
ttgttttcaatacgactgtcctgag |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
13189 |
ttgttttcaatacgactgtcctgag |
13165 |
T |
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