View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10045_high_13 (Length: 238)
Name: NF10045_high_13
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 37809780 - 37809893
Alignment:
| Q |
109 |
tacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttttctgcaaataatcaaacctcgtatgaaaattgtctccttga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
37809780 |
tacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttttctgcaaataatcaaaccacatatgaaaattgtctccttga |
37809879 |
T |
|
| Q |
209 |
gttggtgaacagaa |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37809880 |
gttggtgaacagaa |
37809893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 37646218 - 37646108
Alignment:
| Q |
109 |
tacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttttctgcaaataatcaaacctcg----tatgaaaattgtctcc |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37646218 |
tacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttttctgcaaataatcaaacctcgtatatatgaaaattgtctcc |
37646119 |
T |
|
| Q |
205 |
ttgagttggtg |
215 |
Q |
| |
|
|||| |||||| |
|
|
| T |
37646118 |
ttgaattggtg |
37646108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 37814625 - 37814735
Alignment:
| Q |
109 |
tacatatatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttttctgcaaataatcaaacctcg----tatgaaaattgtctcc |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37814625 |
tacatatacagaattatagatgttaaggtaaagaaaattaagaagtaaaggtacctttttctgcaaataatcaaacctcgtatatatgaaaattgtctcc |
37814724 |
T |
|
| Q |
205 |
ttgagttggtg |
215 |
Q |
| |
|
|||| |||||| |
|
|
| T |
37814725 |
ttgaattggtg |
37814735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37809672 - 37809723
Alignment:
| Q |
1 |
cagacactcttttttgactgattctgtgactgcacgacattccttatgcact |
52 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37809672 |
cagacactcttttttgactgattctgagactgcacgacattccttatgcact |
37809723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 37635809 - 37635762
Alignment:
| Q |
115 |
tatagaattatagatgttaaggtaaagaaaattaagaagtaaaggtac |
162 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37635809 |
tatagaactatagatgtcaaggtaaagaaaattaagaagtaaaggtac |
37635762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37635924 - 37635873
Alignment:
| Q |
1 |
cagacactcttttttgactgattctgtgactgcacgacattccttatgcact |
52 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
37635924 |
cagacactcttttgtgactgaatctgcaactgcacgacattccttatgcact |
37635873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University