View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10045_low_1 (Length: 424)
Name: NF10045_low_1
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 50753355 - 50752963
Alignment:
| Q |
13 |
caaaggttccgatggcgaaggagaatccatgggaggccgcaccacttttgtgaggtgcaggagcatgagcaggaggggaagaaattgatgatggtgggag |
112 |
Q |
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| T |
50753355 |
caaaggttccgatggcgaaggagaatccatgggaggccgcaccacttttgtgaggtgcaggagcatgagcaggaggggaagaaattgatgatggtgggag |
50753256 |
T |
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| Q |
113 |
agaaggtgacatcgatggtggagtaataggcgacagagagttgacaatagatggaccagtgccaatggtaatcacaacagaagccttaggagatgtcgtt |
212 |
Q |
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| T |
50753255 |
agaaggtgacaccgatggtggagtaataggcgacagagagttgacaatagatggaccagtgccaatggtaatcacaacagaagccttaggagatgccgtt |
50753156 |
T |
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| Q |
213 |
ggatattgtgcaacgacagagagaaagaacattgctacaaagagcatcggaaaggtaatgcaaatgcgagccattctcaaaagtagagagatgaaataga |
312 |
Q |
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| T |
50753155 |
ggatattgtgcaacgacagagagaaagaacattgctacaaagagcatcgaaaaggtaatgcaaatgcgagccattctcaaaagtagagagaggaaataga |
50753056 |
T |
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| Q |
313 |
gagtgaaatgtgatgagagagactaataaatgcgaagaacgtgaatgtatgagagtgtgagaataagggtactggatagagaatatatagatg |
405 |
Q |
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| T |
50753055 |
gagtgaaatgtgatgagagagactaataaatgcgaagaaggtgaatatatgagagtgtgagaataagggtactggatagagaatatatagatg |
50752963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 1861148 - 1861098
Alignment:
| Q |
33 |
gagaatccatgggaggccgcaccacttttgtgaggtgcaggagcatgagca |
83 |
Q |
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| T |
1861148 |
gagaatccatgggaaacagcaccacttttgcgaggtgcaggagcaggagca |
1861098 |
T |
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