View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10045_low_12 (Length: 263)
Name: NF10045_low_12
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_low_12 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45271352 - 45271090
Alignment:
| Q |
1 |
cagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45271352 |
cagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctt |
45271253 |
T |
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| Q |
101 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
45271252 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaa |
45271153 |
T |
|
| Q |
201 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45271152 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgt |
45271090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45283126 - 45282864
Alignment:
| Q |
1 |
cagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctt |
100 |
Q |
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||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45283126 |
cagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctt |
45283027 |
T |
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| Q |
101 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45283026 |
cttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaatgctgttgttgccaaggatggtagcggccaatttaa |
45282927 |
T |
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| Q |
201 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgt |
263 |
Q |
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| T |
45282926 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgt |
45282864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45274885 - 45274623
Alignment:
| Q |
1 |
cagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45274885 |
cagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctg |
45274786 |
T |
|
| Q |
101 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
45274785 |
cttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaa |
45274686 |
T |
|
| Q |
201 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgt |
263 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |
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| T |
45274685 |
aaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgt |
45274623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45294514 - 45294252
Alignment:
| Q |
1 |
cagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctt |
100 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294514 |
cagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctg |
45294415 |
T |
|
| Q |
101 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
200 |
Q |
| |
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|||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||||||| |
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| T |
45294414 |
cttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaa |
45294315 |
T |
|
| Q |
201 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgt |
263 |
Q |
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|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||| |
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| T |
45294314 |
aaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgt |
45294252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45303474 - 45303212
Alignment:
| Q |
1 |
cagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303474 |
cagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctg |
45303375 |
T |
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| Q |
101 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
200 |
Q |
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|||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||||||| |
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| T |
45303374 |
cttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaa |
45303275 |
T |
|
| Q |
201 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgt |
263 |
Q |
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|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||| |
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| T |
45303274 |
aaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgt |
45303212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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