View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10045_low_16 (Length: 244)
Name: NF10045_low_16
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 52883235 - 52883448
Alignment:
| Q |
1 |
catttcaaaaacttcattgctaagaattggtcttccactgctcactccatctctttcgccgataaagactttgttaggaatcacattctcctctttttac |
100 |
Q |
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| T |
52883235 |
catttcaaaaacttcattgctaagaattggtcttccactgctcactccatctctttcgccgataaagactttgttaggaatcacattctcctctttttac |
52883334 |
T |
|
| Q |
101 |
ctcaacttccttctcttttgaggtatgttatttcattattttacttactctactcactccattctcactcaattgcactctacctgtttgtaataattcc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52883335 |
ctcaacttccttctcttttgaggtatgttatgtcattattttacttactct----actccattctcactcaattgcactctacctgtttgtaataattcc |
52883430 |
T |
|
| Q |
201 |
cattcccattcccattcc |
218 |
Q |
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|||||||||||||||||| |
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| T |
52883431 |
cattcccattcccattcc |
52883448 |
T |
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