View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10045_low_22 (Length: 229)
Name: NF10045_low_22
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28699329 - 28699107
Alignment:
| Q |
1 |
tagttgtgtttcactttcttactctacacataattgtctaattttagttactgcattatttatttgttttgatccccttcatcttcactttcttcaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
28699329 |
tagttgtgtttcactttcttactctacacataattgtctaattttagttactgcattatttatttgttttgatctccttcatctttactttcttcaaaca |
28699230 |
T |
|
| Q |
101 |
accaccnnnnnnnncttggtacatttgcttccaattcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctg |
200 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28699229 |
gccaccttttttctcttggtccatttgcttccaattcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctg |
28699130 |
T |
|
| Q |
201 |
gtcctcaagttcagccttatcgg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28699129 |
gtcctcaagttcagccttatcgg |
28699107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University