View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10045_low_7 (Length: 291)
Name: NF10045_low_7
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 31628911 - 31629157
Alignment:
| Q |
1 |
cttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaaatcaaccatatcaactccatttctcataatgctctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31628911 |
cttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaactcaaccatatcaactccatttctcataatgctctc |
31629010 |
T |
|
| Q |
101 |
aggtttgatttcagttcaactcaactttctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31629011 |
aggtttgatttcagttcaactcaactttctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaa |
31629110 |
T |
|
| Q |
201 |
gacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctag |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31629111 |
gacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctag |
31629157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 31643561 - 31643626
Alignment:
| Q |
182 |
tattctatgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctag |
247 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31643561 |
tattctatgcagaagtgaagacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctag |
31643626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 31650740 - 31650799
Alignment:
| Q |
188 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctag |
247 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31650740 |
atgcagaaatgaagacgatgacaataagcgttgggttcaaatcatatcgtgggagcctag |
31650799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 31635593 - 31635652
Alignment:
| Q |
188 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctag |
247 |
Q |
| |
|
||||||| | || ||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31635593 |
atgcagacgcgatgacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctag |
31635652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 31654226 - 31654268
Alignment:
| Q |
205 |
atgacaataagcgttgggttcaaatcgtatcgtgggagcctag |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31654226 |
atgacaataagcgttgggttcaaatcatatcgtgggagcctag |
31654268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 31654029 - 31654086
Alignment:
| Q |
3 |
tcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatccc |
60 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||| |||||||||| |||||||| |
|
|
| T |
31654029 |
tcacattgtttgtgactttcacattcctcattcttattatcttaactcttcgtatccc |
31654086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 31650546 - 31650600
Alignment:
| Q |
3 |
tcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtat |
57 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||| |||||||||| ||||| |
|
|
| T |
31650546 |
tcacattgtttgtgactttcacattcctcattcttattatcttaactcttcgtat |
31650600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University