View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10045_low_8 (Length: 287)
Name: NF10045_low_8
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 53348 - 53609
Alignment:
| Q |
8 |
tggtgttgctgaattgacatttaaacttcaaatttccgtgtgactgtaattttcaggagctatgaattaatggaagagagactcaaagtgtatgtataca |
107 |
Q |
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| T |
53348 |
tggtgttgctgaattgacatttaaacttcaaatttccgtgtgactgtaattttcaggagctatgaattaatggaagagagactcaaagtgtatgtataca |
53447 |
T |
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| Q |
108 |
gagaaggagctagacctatactgcattcgccgtttctcaccggaatctatgcttctgaagggtggtttatgaagctaatggaagctaataaacgatttgt |
207 |
Q |
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| T |
53448 |
gagaaggagctagacctatactgcattcgccgtttctcactggaatctatgcttctgaagggtggtttatgaagctaatggaagctaataaacgatttgt |
53547 |
T |
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| Q |
208 |
taccaaaaatccaaagaaggctcatctgttttacttgccattcagttctaggatgctagagg |
269 |
Q |
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| T |
53548 |
taccaaaaatccaaagaaggctcatctgttttacttgccattcagttctaggatgctagagg |
53609 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 41686652 - 41686859
Alignment:
| Q |
62 |
aggagctatgaattaatggaagagagactcaaagtgtatgtatacagagaaggagctagacctatactgcattcgccgtttctcaccggaatctatgctt |
161 |
Q |
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| T |
41686652 |
aggagctatgaactgatggaaaagattctcaaggtttatgtatacagagaaggagctaagccgataatgcattcgccaaatcttttgggaatttatgctt |
41686751 |
T |
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| Q |
162 |
ctgaagggtggtttatgaagctaatggaagctaataaacgatttgttaccaaaaatccaaagaaggctcatctgttttacttgccattcagttctaggat |
261 |
Q |
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| T |
41686752 |
ccgagggatggttcatgaagctgatggaagcaaataaagtatttgtgactaaagatccaaaaaatgctcacctgttttacctgcctttcagttctcaaat |
41686851 |
T |
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| Q |
262 |
gctagagg |
269 |
Q |
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| T |
41686852 |
gctagagg |
41686859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 256
Target Start/End: Original strand, 51206858 - 51207052
Alignment:
| Q |
62 |
aggagctatgaattaatggaagagagactcaaagtgtatgtatacagagaaggagctagacctatactgcattcgccgtttctcaccggaatctatgctt |
161 |
Q |
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| T |
51206858 |
aggagctatgaattgatggaaaagactctcaaagtgtatgtatacagagaagggtcaaagccaataatgcattcaccatatcttttgggcatatatgctt |
51206957 |
T |
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| Q |
162 |
ctgaagggtggtttatgaagctaatggaagctaataaacgatttgttaccaaaaatccaaagaaggctcatctgttttacttgccattcagttct |
256 |
Q |
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| T |
51206958 |
ccgagggatggttcatgaggttgatggaagctaataaagcatttgtcacgaaagatgcaaagaaggcccacctgttttacttaccttttagttct |
51207052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 41548025 - 41547987
Alignment:
| Q |
149 |
ggaatctatgcttctgaagggtggtttatgaagctaatg |
187 |
Q |
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| T |
41548025 |
ggaatctatgcttctgaaggatggtttatgaagttaatg |
41547987 |
T |
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