View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10045_low_9 (Length: 274)
Name: NF10045_low_9
Description: NF10045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10045_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 40180105 - 40180366
Alignment:
| Q |
1 |
ctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaagcctgtaataacctgccgacagtgcaatagtttagtcccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||| |
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| T |
40180105 |
ctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaactgacacaaggctgtaataaccttccgacagtgcgatagtttagtcccctc |
40180204 |
T |
|
| Q |
101 |
ttcctggtgctccacctcctgagggaaatcaataacagtcaacaaatccaaagccaaatatacagtttcttttcttgaacaaagtgtgccaaactcaaat |
200 |
Q |
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||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40180205 |
ttccttgtgctccacctccttatggatatcaataacagtcaacaaatccaaagccaaatatacagtttcttttcttgaacaaagtgtgtcaaactcaaat |
40180304 |
T |
|
| Q |
201 |
attctatggggtaacatcctatctaacgctagcccccagtttgggtttcttttccatttctc |
262 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
40180305 |
attctatggggtaacagcctatctaactctagcccccagtttgggtttcttttccgtttctc |
40180366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 38604618 - 38604671
Alignment:
| Q |
6 |
atcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
59 |
Q |
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| T |
38604618 |
atcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaag |
38604671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 38604765 - 38604797
Alignment:
| Q |
153 |
gccaaatatacagtttcttttcttgaacaaagt |
185 |
Q |
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| T |
38604765 |
gccaaatatacagtttctttttttgaacaaagt |
38604797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44460792 - 44460734
Alignment:
| Q |
1 |
ctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
59 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
44460792 |
ctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag |
44460734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44468325 - 44468267
Alignment:
| Q |
1 |
ctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
59 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
44468325 |
ctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag |
44468267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34501892 - 34501950
Alignment:
| Q |
1 |
ctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
59 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| || |||| |||||||| ||||||| |
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| T |
34501892 |
ctgcaatcattttaaggatcaacttcttggctgcttctaaatttttaaacccacacaag |
34501950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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