View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_high_12 (Length: 250)
Name: NF10046_high_12
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 9783865 - 9783705
Alignment:
| Q |
1 |
cagatttaccatcaaattcagaaacaagctaaggattcatccatacaaccattaagcaactgtgatcatattcatgccattaatcttttatgactgcttt |
100 |
Q |
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| T |
9783865 |
cagatttaccatcaaattcagaaacaagctaaggattcatccatacaaccatcaagcaactgtgatcatattcatgccattaatctttgatgactgcttt |
9783766 |
T |
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| Q |
101 |
cacagcccttttggcacaagccagaacgatcagttagacaaaatctggcaatcaacacattt |
162 |
Q |
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| T |
9783765 |
cagaacccttttcgcacaagccagaatgatc-gttagacaaaatctggcaatcaacacattt |
9783705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 9782689 - 9782645
Alignment:
| Q |
192 |
tagtgtatgtacacatatctagctgaattccttcgtctttcatct |
236 |
Q |
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| T |
9782689 |
tagtgtatgtacacatatctggctgaattccttcgtctttcatct |
9782645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 30151282 - 30151126
Alignment:
| Q |
5 |
tttaccatcaaattcagaaacaagctaaggattcatccatacaaccattaagcaactgtgatcatattcatgccattaatcttttatgactgctttcaca |
104 |
Q |
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| T |
30151282 |
tttaccatcaaactcagaaacaaactaagcattaatc-atacaaccaacaagcaccttcaatcatattcatgccatttctctttgatgattgttttcaaa |
30151184 |
T |
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| Q |
105 |
gcccttttggcacaagccagaacgatcagttagacaaaatctggcaatcaacacattt |
162 |
Q |
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| T |
30151183 |
atctttttcgcaaaagccaggttgatcagttagacaaaatcgggcaatcaacacattt |
30151126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 29948403 - 29948503
Alignment:
| Q |
61 |
tgtgatcatattcatgccattaatcttttatgactgctttcacagcccttttggcacaagccagaacgatcagttagacaaaatctggcaatcaacacat |
160 |
Q |
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||||||||||||||||||||| |||| ||||| ||||| | || |||| ||||||||||| ||| ||||| ||||||||||||||||||||||| |
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| T |
29948403 |
tgtgatcatattcatgccatttctcttggatgacaattttcaaaaccttttttgcacaagccagtttgattagttacacaaaatctggcaatcaacacat |
29948502 |
T |
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| Q |
161 |
t |
161 |
Q |
| |
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| |
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|
| T |
29948503 |
t |
29948503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 30035541 - 30035403
Alignment:
| Q |
5 |
tttaccatcaaattcagaaacaagctaaggattcatccatacaaccattaagcaactgtgatcatattcatgccattaatcttttatgactgctttcaca |
104 |
Q |
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|||||||||||| |||||||||| ||||| ||| ||| ||||||||| ||||| || ||||||||||||||||| ||||| |||| || ||||| | |
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| T |
30035541 |
tttaccatcaaactcagaaacaaactaagcattaatc-atacaaccaacaagcaccttcaatcatattcatgccatttctctttgatgattgttttcaaa |
30035443 |
T |
|
| Q |
105 |
gcccttttggcacaagccagaacgatcagttagacaaaat |
144 |
Q |
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| |||| ||| ||||||| ||||||||||||||||| |
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| T |
30035442 |
atctttttcgcaaaagccaggttgatcagttagacaaaat |
30035403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 30053575 - 30053533
Alignment:
| Q |
194 |
gtgtatgtacacatatctagctgaattccttcgtctttcatct |
236 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
30053575 |
gtgtatgtaaacatatctggctgaattccttcgtctttcatct |
30053533 |
T |
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