View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10046_high_13 (Length: 248)

Name: NF10046_high_13
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10046_high_13
NF10046_high_13
[»] chr5 (10 HSPs)
chr5 (13-248)||(10760683-10760918)
chr5 (35-135)||(10612362-10612462)
chr5 (35-135)||(10565655-10565755)
chr5 (35-135)||(10581647-10581747)
chr5 (35-131)||(10605404-10605500)
chr5 (71-135)||(10746489-10746553)
chr5 (66-135)||(7193689-7193758)
chr5 (35-135)||(10651660-10651760)
chr5 (36-123)||(9827429-9827516)
chr5 (36-123)||(9835798-9835885)
[»] chr6 (2 HSPs)
chr6 (71-135)||(12958745-12958809)
chr6 (35-135)||(12907821-12907921)
[»] chr2 (1 HSPs)
chr2 (71-135)||(17922875-17922939)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 10760918 - 10760683
Alignment:
Q  13 gatgaagatttttgacccacatcacatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760918 gatgaagatttttgacccacatcacatcttgtatcaagagatgtaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagt 10760819  T
Q  113 gcttagtttcactgtttaggattaatatttcctataataatggctgagttattaaaacaaccacaattgagtgtgcatattacagcttaagttcagttag 212  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760818 gcttagtttcactgtttaggattaatatttcctgtaataatggctgagttattaaaacaaccacaattgagtgtgcatattacagcttaagttcagttag 10760719  T
Q  213 tctgttgaccttgttaattttcaatttataatcagt 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  10760718 tctgttgaccttgttaattttcaatttataatcagt 10760683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 10612362 - 10612462
Alignment:
Q  35 cacatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggat 134  Q
    |||||||||| |||| | ||||| |||||||||||||||||||||| | || |||||||||||||||| || || |||||||||||||||| ||||||||    
T  10612362 cacatcttgtgtcaaaatatgcagaagtagaaatacaagatggaaagagtgagaatcttattccaagtttaaaggagtgcttagtttcactttttaggat 10612461  T
Q  135 t 135  Q
    |    
T  10612462 t 10612462  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 10565655 - 10565755
Alignment:
Q  35 cacatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggat 134  Q
    |||||||| ||||||  |||||| |||| |||||  ||||||||||  ||| |||||||||||||  || | || |||||||||||||||| ||||||||    
T  10565655 cacatcttttatcaatggatgcagaagttgaaatgaaagatggaaatcatgagaatcttattccacctgcaaaggagtgcttagtttcactttttaggat 10565754  T
Q  135 t 135  Q
    |    
T  10565755 t 10565755  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 10581647 - 10581747
Alignment:
Q  35 cacatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggat 134  Q
    |||||||| ||||||| || ||| ||||||||||  ||||||||||   || |||||||||||||  || | || |||||||||||||||| ||||||||    
T  10581647 cacatcttttatcaagggacgcagaagtagaaatggaagatggaaatcttgagaatcttattccagctgcaaaggagtgcttagtttcactttttaggat 10581746  T
Q  135 t 135  Q
    |    
T  10581747 t 10581747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 10605404 - 10605500
Alignment:
Q  35 cacatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttag 131  Q
    |||| |||||| ||||||||| | |||||| |||| || |||||||| ||  ||||||||||||||| |||||| | | |||||||||||| |||||    
T  10605404 cacaccttgtaacaagagatgtagaagtagcaatagaaaatggaaaccatacgaatcttattccaagggtagaggaatccttagtttcactttttag 10605500  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 10746553 - 10746489
Alignment:
Q  71 aagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggatt 135  Q
    ||||||||||||||| |||||||||||||| |||| |  |||| ||||||||||| |||||||||    
T  10746553 aagatggaaacaatgagaatcttattccaactgtaaaagagtgtttagtttcactttttaggatt 10746489  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 7193689 - 7193758
Alignment:
Q  66 aatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggatt 135  Q
    |||| |||||||||||| ||| ||| | | ||||| ||||||||||||| |||||||||| |||||||||    
T  7193689 aatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggatt 7193758  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 10651760 - 10651660
Alignment:
Q  35 cacatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggat 134  Q
    ||||||||||| ||||| ||| | ||| ||||||| |||| ||||||  ||| ||| | | ||||| |||||||||||| ||||||||||| || |||||    
T  10651760 cacatcttgtaccaagaaatgaagaagaagaaatagaagaaggaaactgtggaaatttcactccaactgtagagaagtgtttagtttcacttttcaggat 10651661  T
Q  135 t 135  Q
    |    
T  10651660 t 10651660  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 9827516 - 9827429
Alignment:
Q  36 acatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttca 123  Q
    |||| ||||| ||||||||| | ||| || |||| |||||||||| | || |||||||||||||  |||| |||| ||||||||||||    
T  9827516 acattttgtaccaagagatgaagaagcagcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttca 9827429  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 9835885 - 9835798
Alignment:
Q  36 acatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttca 123  Q
    |||| ||||| ||||||||| | ||| || |||| |||||||||| | || |||||||||||||  |||| |||| ||||||||||||    
T  9835885 acattttgtaccaagagatgaagaagcagcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttca 9835798  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 12958745 - 12958809
Alignment:
Q  71 aagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggatt 135  Q
    ||||||||||  ||| || ||||||||||| ||||||| |||||||||||||||| |||||||||    
T  12958745 aagatggaaatcatgagattcttattccaactgtagaggagtgcttagtttcactttttaggatt 12958809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 12907821 - 12907921
Alignment:
Q  35 cacatcttgtatcaagagatgcaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggat 134  Q
    |||||||| || |||||| || | ||| || |||| |||||||||   ||| || ||||||||||| ||||||| ||||||||  |||||| ||||||||    
T  12907821 cacatcttttaccaagagctgaagaaggaggaatagaagatggaattcatgagattcttattccaaatgtagaggagtgcttaacttcactttttaggat 12907920  T
Q  135 t 135  Q
    |    
T  12907921 t 12907921  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 17922939 - 17922875
Alignment:
Q  71 aagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggatt 135  Q
    ||||||||||  ||| || |||| |||||| ||||||| ||||||||||||| || |||||||||    
T  17922939 aagatggaaatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggatt 17922875  T

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