View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_high_15 (Length: 240)
Name: NF10046_high_15
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 55547425 - 55547202
Alignment:
| Q |
1 |
ttcgttctgtaatgtgagaattcaatttcccttttctatattgtattttgtttggtggaagatatgtgttcatgttcgtttttgtgcagatgtttgtgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55547425 |
ttcgttctgtaatgtgagaattcaatttcccttttctatattgtattttgtttggtggaagatatgtgttcatgttcgtttttgtgcagatgtttgtgcc |
55547326 |
T |
|
| Q |
101 |
ctgaaccctatccagaagcaactgcggaatttttgaatgctaacggaattaggctttatcaattcggtatcgatggctgcaaggtttgtatcataatttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55547325 |
ctgaaccctatccagaagcaactgcggaatttttgaatgctaacggaattaggctttatcaattcggtatcgatggctgcaaggtttgtatcataatttc |
55547226 |
T |
|
| Q |
201 |
atgttgtccacctaccagttaaat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
55547225 |
atgttgtccacctaccagttaaat |
55547202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 19671081 - 19670967
Alignment:
| Q |
90 |
atgtttgtgccctgaaccctatccagaagcaactgcggaatttttgaatgctaacggaattaggctttatcaattcggtatcgatggctgcaaggtttgt |
189 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19671081 |
atgtttgtgccctgaaccctatcctgaagctactgcggagtttttgattgt----ggaattaggctttatcaattgggtatcgatggctgcaaggtttgc |
19670986 |
T |
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| Q |
190 |
atcataatttcatgttgtc |
208 |
Q |
| |
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|||| |||||||||||||| |
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| T |
19670985 |
atcacaatttcatgttgtc |
19670967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 19792797 - 19792594
Alignment:
| Q |
1 |
ttcgttctgtaatgtgagaattcaatttcccttttctatattgtattttgtttggtggaagatatgtgttcatgttcgtttttgtgcagatgtttgtgcc |
100 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||| |
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| T |
19792797 |
ttcgttccgtaatgtgagaattcaatttcaactttctatattgtattttgtttggtggaagatatgtgtttatgttcatttttgcgcatatgtttgtgcc |
19792698 |
T |
|
| Q |
101 |
ctgaaccctatccagaagcaactgcggaatttttgaatgctaacggaattaggctttatcaattcggtatcgatggctgcaaggtttgtatcataatttc |
200 |
Q |
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||||||||||||| ||||| |||||||| ||||| | | | |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
19792697 |
ctgaaccctatcctgaagccactgcggagtttttta----ttatggaattaggctttatcaattgggtatcgatggctgcaaggtttgcatcacaatttc |
19792602 |
T |
|
| Q |
201 |
atgttgtc |
208 |
Q |
| |
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|||||||| |
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|
| T |
19792601 |
atgttgtc |
19792594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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