View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_high_8 (Length: 294)
Name: NF10046_high_8
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 45082566 - 45082289
Alignment:
| Q |
1 |
agctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082566 |
agctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatg |
45082467 |
T |
|
| Q |
101 |
acaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtga |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082466 |
acaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtga |
45082367 |
T |
|
| Q |
201 |
ctattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatga |
278 |
Q |
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||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082366 |
ctattgcgggcaaagttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatga |
45082289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 45078257 - 45077993
Alignment:
| Q |
14 |
aaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacaggttcttatg |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45078257 |
aaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtgttttggatgacaggttcttatg |
45078158 |
T |
|
| Q |
114 |
gagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactattgcaggcaa |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45078157 |
gagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactattgcgggcaa |
45078058 |
T |
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| Q |
214 |
acttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatga |
278 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45078057 |
acttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatga |
45077993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 45075039 - 45074763
Alignment:
| Q |
2 |
gctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatga |
101 |
Q |
| |
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|||||||| |||||| | ||| |||||||||| || | |||||||||||||||||||||||||||| ||||| | ||| |||||||||| |||||||||| |
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| T |
45075039 |
gctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatga |
45074940 |
T |
|
| Q |
102 |
caggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgac |
201 |
Q |
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|||| |||||| || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||| |
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| T |
45074939 |
cagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaagaatgtgac |
45074840 |
T |
|
| Q |
202 |
tattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatga |
278 |
Q |
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|||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
45074839 |
tattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtttctaatgcgactattgaaatga |
45074763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 45067480 - 45067203
Alignment:
| Q |
1 |
agctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatg |
100 |
Q |
| |
|
||||||||| |||||| | ||||| |||||||| || | ||||||||| || || |||||||||||| ||||||| ||| |||||||||| ||||||||| |
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| T |
45067480 |
agctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatg |
45067381 |
T |
|
| Q |
101 |
acaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtga |
200 |
Q |
| |
|
||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
45067380 |
acaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgctaagaatgtga |
45067281 |
T |
|
| Q |
201 |
ctattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatga |
278 |
Q |
| |
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| |||||||| ||||||| |||||||| || |||||||| || || ||||| |||||||||||||||||||||||| |
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| T |
45067280 |
caattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatga |
45067203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 34504815 - 34504539
Alignment:
| Q |
1 |
agctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaataca---ttgaaatatgtgttttgg |
97 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| | | ||||||||||||||||||||||||| || | ||||| ||| |||| ||||||||||||| |
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| T |
34504815 |
agctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatgtgttttgg |
34504716 |
T |
|
| Q |
98 |
atgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatg |
197 |
Q |
| |
|
||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |||||| | || ||||||||| | |||||||||| |
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| T |
34504715 |
ttgacagggtcttatggagaccaccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgctaagaatg |
34504616 |
T |
|
| Q |
198 |
tgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaa |
274 |
Q |
| |
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|||| |||| || |||||||||||||||| || || |||||||| || |||||| |||||||||||||||||||| |
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| T |
34504615 |
tgaccgttgcggggcaacttgaaggaatttctaatgatccttttacagggatatgtatttctaatgtgactattgaa |
34504539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 17584518 - 17584404
Alignment:
| Q |
1 |
agctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatg |
100 |
Q |
| |
|
|||| |||| |||||| |||| || |||||||| || | |||||| | || ||||| | ||||||| | ||||| ||| |||||||||||||||||||| |
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| T |
17584518 |
agctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttggatg |
17584419 |
T |
|
| Q |
101 |
acaggttcttatgga |
115 |
Q |
| |
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|||||||| |||||| |
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|
| T |
17584418 |
acaggttcatatgga |
17584404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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