View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_1 (Length: 641)
Name: NF10046_low_1
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 4721366 - 4721986
Alignment:
| Q |
8 |
aatcaaaggtaaatgtcgaataataaaatggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacc |
107 |
Q |
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| T |
4721366 |
aatcaaaagtaaatgtcgaataataaaatggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacc |
4721465 |
T |
|
| Q |
108 |
caacataaccacctaccaaattcaacatatatacaaatacgcacggacaagcaaaacagataggcatcttctctgctaaaaggaacgtatgaattaccaa |
207 |
Q |
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| T |
4721466 |
caacataaacacctaccatattcaacatatatacaaatacgcacagacaagcaaaacagataggcatcttctctgctaaaaggaatgtatgaattaccaa |
4721565 |
T |
|
| Q |
208 |
aatctaagataaggtattagtatcaaagtcgatataatgat--caattacaaaatattaacattagatatgatgtattcatatagataaggaattatgat |
305 |
Q |
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||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4721566 |
aatctaagataaggtattagtatcaaagtcgatgtagtgatgtcaattacaaaatattaacattagatatgatgtattcatctagataaggaattatgat |
4721665 |
T |
|
| Q |
306 |
caaagcattcttcacgataagttgttttcatctatgcatcaaataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaat |
405 |
Q |
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| T |
4721666 |
caaagcattcttcacgataagttgttttcatctatgcatcaaataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaat |
4721765 |
T |
|
| Q |
406 |
tgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctc |
505 |
Q |
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| T |
4721766 |
tgcattcgaatgatatatgttcttcttttaacatggtcttatcttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctc |
4721865 |
T |
|
| Q |
506 |
aacttgagtaaaggctactggtgtacctttttcctctagtgaggaaagaagactttcttcctctaagcttctcttgt-gttgtcacccaaattatttgag |
604 |
Q |
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| T |
4721866 |
aacttgagtaaaggctactggtgtacctttttcctctagtgaggaaagaagactttcttcctctaagcttctcttgtcgttgtcacccaaattatttgag |
4721965 |
T |
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| Q |
605 |
ccttgaaacaatggccccatt |
625 |
Q |
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| T |
4721966 |
ccttgaaacaatggccccatt |
4721986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 155 - 582
Target Start/End: Original strand, 54923478 - 54923910
Alignment:
| Q |
155 |
caagcaaaacagataggcatcttctctgctaaaaggaacgtatgaattac---caaaatctaagataaggtattagtatcaaagtcgatataatgat--c |
249 |
Q |
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| T |
54923478 |
caagcaaaacagataggtatcttctctgctaaaaggaaaatatgaattactaccaaaatcttagataaggaattggtatcaaagccgatgttatgatgtc |
54923577 |
T |
|
| Q |
250 |
aattacaaaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaaat |
349 |
Q |
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| T |
54923578 |
tattaccatatattaacattagctacaatatattcatttatataaggaattaatatcaaagcatatgtcacctcgtactgttttcatctaagcattaaat |
54923677 |
T |
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| Q |
350 |
accatgtgatcgaaattggaagcaa-aacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatc |
448 |
Q |
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| T |
54923678 |
accatgtcc-cgtaagtaaaaacgacaacttagaagatgaggatcttgattcttaattgtcttcgaataatatatgttcttcttttaatgtggtcctatc |
54923776 |
T |
|
| Q |
449 |
ttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagtgag |
548 |
Q |
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| T |
54923777 |
ttcaataacagatacccaactttctgcaactctggtaactcttccttctgagagctcaactaaagtaaaggctcttgctgtaccttctgccactagtgag |
54923876 |
T |
|
| Q |
549 |
gaaagaagactttcttcctctaagcttctcttgt |
582 |
Q |
| |
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|| | | ||||||| ||| |||||||||||||| |
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| T |
54923877 |
gacataggactttcaacctttaagcttctcttgt |
54923910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 54916016 - 54916066
Alignment:
| Q |
405 |
ttgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaaca |
455 |
Q |
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| T |
54916016 |
ttgccttcaaataatacatgttcttcttttaaggtggtcctgtcttcaaca |
54916066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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