View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_11 (Length: 291)
Name: NF10046_low_11
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 284874 - 284608
Alignment:
| Q |
1 |
tttgaggcggttgtcagtgtttatgttagttgggtttatgttgactgggatgtcaacggcgagattcgtggtagagaagaacagcttgtcggtgacttca |
100 |
Q |
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| T |
284874 |
tttgtggcggttgtcagtgtttatgttagttgggtttatgttgactgggatgtcaacggcgagattcgtggtagagaagaacagcttgtcggtgacttca |
284775 |
T |
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| Q |
101 |
cctgataaaatcaaaggaaaacatgacagtgcgattggtaactttgggattcctcaatatggtggtagcatggctggtaatgttgtttatcctaaagata |
200 |
Q |
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| T |
284774 |
cctgataaaatcaaaggaaaacatgacagtgcgattggtaactttgggattcctcaatatggtggtagcatggctggtaatgttgtttatcctaaagata |
284675 |
T |
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| Q |
201 |
acaataagggttgtaaagactttgatgatgattcttcatctttcaaatccaaacccggtgctcttcctac |
270 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
284674 |
acaataagggttgtaaagactttga---tgattcttcatctttcaaatccaaacccggtgctcttcctac |
284608 |
T |
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Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 48132388 - 48132563
Alignment:
| Q |
53 |
tcaacggcgagattcgtggtagagaagaacagcttgtcggtgacttcacctgataaaatcaaaggaaaacatgacagtgcgattggtaactttgggattc |
152 |
Q |
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|||| ||||| ||||||||| ||||||||||||||| |||||||||||| |||| ||||| |||| | | || ||||||||||||||||||||||||| |
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| T |
48132388 |
tcaatggcgaaattcgtggtggagaagaacagcttgagggtgacttcaccggatagtatcaagggaacatacgatagtgcgattggtaactttgggattc |
48132487 |
T |
|
| Q |
153 |
ctcaatatggtggtagcatggctggtaatgttgtttatcctaaagataacaataagggttgtaaagactttgatga |
228 |
Q |
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| T |
48132488 |
ctcaatacggtggtagcatggctgggaacgttgtgtatccaaaggataatcaaaagggttgtaaagagtttgatga |
48132563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 46688999 - 46689173
Alignment:
| Q |
53 |
tcaacggcgagattcgtggtagagaagaacagcttgtcggtgacttcacctgataaaatcaaaggaaaacatgacagtgcgattggtaactttgggattc |
152 |
Q |
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|||| ||||| ||||||||| |||||||||| |||| ||| |||||||| |||| |||||||||| | | |||||| | ||||||||||||||||| | |
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| T |
46688999 |
tcaatggcgaaattcgtggtggagaagaacaacttgagggtcacttcaccggatagtatcaaaggaacatacgacagtacaattggtaactttgggatac |
46689098 |
T |
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| Q |
153 |
ctcaatatggtggtagcatggctggtaatgttgtttatcctaaagataacaataagggttgtaaagactttgatga |
228 |
Q |
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| T |
46689099 |
ctcaatacggtggtagtatggatgg-gacgttgtgtatccaaaggataatcaaaagggttgtacagagtttgatga |
46689173 |
T |
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