View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_12 (Length: 251)
Name: NF10046_low_12
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45082705 - 45082944
Alignment:
| Q |
1 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatcagaacatttgtagatgaat |
100 |
Q |
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| T |
45082705 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagaaacaatgtagttgtcttcaatcagaacatttgtagatgaat |
45082804 |
T |
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| Q |
101 |
ctgtataaaagaaagagtggtaaaacaagtagttattattttagtcctttttattgaaccttttattcaatatgaatatgaatgccataagttccataga |
200 |
Q |
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| T |
45082805 |
ctgtatgaaagaaagagtgggaaaacaagtagttattattttagtccttgttattgaaccttttattcaatatgaatatgaatgccataagttccataga |
45082904 |
T |
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| Q |
201 |
gttggttcatatat--acattacctgggtctatgccatct |
238 |
Q |
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| T |
45082905 |
gttggttcatatatacacattacctgggtctatgccatct |
45082944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 45067619 - 45067711
Alignment:
| Q |
1 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatcagaacatttgta |
93 |
Q |
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| T |
45067619 |
ccaactttgattccatacccatccaatccacttttaatcgcaatacaatcatcaccagagacaatgtagttgtcttcaattagaacgtttgta |
45067711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 45075179 - 45075258
Alignment:
| Q |
1 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaat |
80 |
Q |
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| T |
45075179 |
ccaaatttgattccatactcatcccatccactttttattgcaatacaatcatcaccagaaactatatagttgtcttcaat |
45075258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 45078409 - 45078488
Alignment:
| Q |
1 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaat |
80 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||| |
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| T |
45078409 |
ccaactttaattccatactcatcccatccactttttattgcaatgcaatcatcgccagagacaatgaagttgtcttcaat |
45078488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 34504963 - 34505057
Alignment:
| Q |
10 |
attccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatcagaacatttgtagatgaatctgt |
104 |
Q |
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| T |
34504963 |
attccatattgatcccatccactttttatcgcaatacaatcatcaccagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgt |
34505057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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