View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_13 (Length: 250)
Name: NF10046_low_13
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 55547857 - 55547618
Alignment:
| Q |
11 |
caaaggaaggagtttggtttggggtttttccattctcagcatattctttctctacacgtctcaatttctatactcttcaaagcatcttatcgaagatcct |
110 |
Q |
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| T |
55547857 |
caaaggaaggagtttggtttggggtttttccattctcagcatattctttctctacacgtctcaatttctatactcttcaaagcatcttatcaaagatcct |
55547758 |
T |
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| Q |
111 |
tcaaacctttttctctctcactgttccttcttctataactattacagatccttcaaactgaagatcccatgaatcactcttcaccctaacgctttcatct |
210 |
Q |
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| T |
55547757 |
tcaaacctttttctctctcactgttccttcttctataactattacagatccttcaaaccgaagatcccatgaatcactcttcgccctaacgctttcatct |
55547658 |
T |
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| Q |
211 |
ttcactcttctcatttttggcgccaaattcatcatgaaac |
250 |
Q |
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| T |
55547657 |
ttcactcttctcatttttggcgccaaattcatcatgaaac |
55547618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 19240658 - 19240614
Alignment:
| Q |
36 |
ttttccattctcagcatattctttctctacacgtctcaatttcta |
80 |
Q |
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| T |
19240658 |
ttttccaatctcaacatattatttctctacacgtctcaatttcta |
19240614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 39643231 - 39643260
Alignment:
| Q |
51 |
atattctttctctacacgtctcaatttcta |
80 |
Q |
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| T |
39643231 |
atattctttctctacacgtctcaatttcta |
39643260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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