View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_3 (Length: 446)
Name: NF10046_low_3
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 24276945 - 24277375
Alignment:
| Q |
16 |
agatttccagggagcaaccggttcaagaggcacatcatgtgggacaggtgttttcttgccacgtggtggagtcggtgcttttcagtcacatcagactaag |
115 |
Q |
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| T |
24276945 |
agattttcagggagcaaccggttcaagaggcacatcatgtgggacaggtgttttcttgccacgtggtggagtcagtgcttttcagtcacatcagactaag |
24277044 |
T |
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| Q |
116 |
agacctggtatgcaacaaactaactatgtgatcttccccgtttaccaactttaatgtgtttacttttaatactgtgagtatggttttaaattgtggtccg |
215 |
Q |
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| T |
24277045 |
agacctggtatgcaacaaactaactatgtgatcttccccgtttaccgactttaatgtgtttacttttaatattgtaagtatggttttaaattgtggtccg |
24277144 |
T |
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| Q |
216 |
caatcgttaaatgacattattgctgcaatttaaaccacattggatgcaatttattgtaatgtacaaggttcgcaatttatctgcaactgtaatttaaaac |
315 |
Q |
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| T |
24277145 |
caatcgttaaatgacattattgctgcaatttaaaccacattggatgcaatttattgcaatgtacaaggtttgcaatttatctgcaactacaatttaaaat |
24277244 |
T |
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| Q |
316 |
cctgattggatgagttaaacacgagtttagatacacaaaatttagaataaaatagtgttctagtaattgaaattgtgtggatttgtgaatttagtccctt |
415 |
Q |
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| T |
24277245 |
catgattggatgagttaaacacgagtttagatacacaaaatttaaaataaaatagtattttaataattgaaattgtgtggatttgtgaatttagtccctt |
24277344 |
T |
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| Q |
416 |
aaattgaataatgtaagttaagttgatattt |
446 |
Q |
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| T |
24277345 |
aaattgaacaatgtaagtcaagttgatattt |
24277375 |
T |
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