View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_4 (Length: 417)
Name: NF10046_low_4
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 44155869 - 44155480
Alignment:
| Q |
12 |
atagggcacgttgcaatgaatttgtcaagataaatcattgaacaaataagatgccaaaaaatggtgattcaggtctcattccaaatcttgagtataaact |
111 |
Q |
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| T |
44155869 |
ataggacacgttgcaatgaatttgtcaagataaatcattgaacaaataagatgccaaaaaatggtgattcaggtctcattccaaatcttgagtataaact |
44155770 |
T |
|
| Q |
112 |
gtatagactggttatcaaatgcaaaataaggacattggtattgcaaaaatgaagacatattggagatagtcaacccctgatcacaatttaaagttcttag |
211 |
Q |
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| T |
44155769 |
gtatagtctggttatcaaatgcaaaataaggacattggtattgccaaaatggagacgtattggagatagtcaacccctgatcactatttaaagttcttag |
44155670 |
T |
|
| Q |
212 |
aggataatgtggatggtgagagtagtgagaacactgatgatggtagatagtgacacatttgtgagaatgtactcgatagagatgaactgcacttatctga |
311 |
Q |
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| T |
44155669 |
aggataatgtggatggtgagagtagtgagaacactgatgatggtggctaatgacacatttgtgagaatgtactcgatagagataaactgcacttatctga |
44155570 |
T |
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| Q |
312 |
tgatcgcattcttttcaaaaaactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaactt |
401 |
Q |
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| T |
44155569 |
tgatcgcattcttttcaaaaaactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaactt |
44155480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 210 - 389
Target Start/End: Original strand, 40894153 - 40894336
Alignment:
| Q |
210 |
agaggataatgtggatggtgagagtagtgagaacactgatgatggtagatagtgacacatttgtgagaatgtactcgatagagatgaactgcacttatct |
309 |
Q |
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| T |
40894153 |
agaggataatgtggatggtgagagtagtgagaacactgataatagtggataatgacacattggtaagaatgtagttgatagagatgaactgcactcatgc |
40894252 |
T |
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| Q |
310 |
gatgatcgcattctttt----caaaaaactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgac |
389 |
Q |
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| T |
40894253 |
gatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcacttgac |
40894336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 379
Target Start/End: Complemental strand, 44214871 - 44214565
Alignment:
| Q |
85 |
tctcattccaaatcttgagtataaactgtatagactggttatcaaatgcaaaataaggacattggtattgcaaaaatgaagacatattggagatagtcaa |
184 |
Q |
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| T |
44214871 |
tctcattgaaaatcttgagtacgaactgtatagactagttaacaaattcaaaatatggacattagtattgcaaaattggagaaatataggagactatcaa |
44214772 |
T |
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| Q |
185 |
cccctgatcacaatttaaagttcttagaggataatgtggatggtgagagtagtgagaacactgatgatggtagat------agtgacacatttgtgagaa |
278 |
Q |
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| T |
44214771 |
tatctgatcacagtctagatttcttagaggataatgttgatggtgagagtggtgagaacaccgacgatggtggatcacatgaatgacgcattggtgagaa |
44214672 |
T |
|
| Q |
279 |
tgtactcgatagag------atgaactgcacttatctgatgatcgcattcttttcaaaaaactttcctcaccaactttcacttcacctctcatgatgaac |
372 |
Q |
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|||| | ||||||| ||| ||| || | ||||||||||||||||||||| | | ||| || ||| ||| | ||||||||||||||||||||||| |
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| T |
44214671 |
tgtagttgatagagatggacatggactacaatcatctgatgatcgcattcttttgagagaacatttctcgccatccttcacttcacctctcatgatgaaa |
44214572 |
T |
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| Q |
373 |
tctttca |
379 |
Q |
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||||||| |
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| T |
44214571 |
tctttca |
44214565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 44146202 - 44146250
Alignment:
| Q |
12 |
atagggcacgttgcaatgaatttgtcaagataaatcattgaacaaataa |
60 |
Q |
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| T |
44146202 |
atagggcacgttgcaatgaatttgtcaagataaatcattgaacaaataa |
44146250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 40894069 - 40894099
Alignment:
| Q |
21 |
gttgcaatgaatttgtcaagataaatcattg |
51 |
Q |
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| T |
40894069 |
gttgcaatgaatttgtcaagataaatcattg |
40894099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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