View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_5 (Length: 398)
Name: NF10046_low_5
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 55339702 - 55340091
Alignment:
| Q |
18 |
atcaatgtcgcatcacctttaacataactgggaacatttttaatggcctagacaatttttataagtcatttcagaagtcagaacaaagaaaaaagcagca |
117 |
Q |
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| T |
55339702 |
atcaatgtcgcatcacctttaacataactgtgaacatttttaatggcctagacaatttttaggagtcatttcagaagtcagaacaaagaaaaaagcagca |
55339801 |
T |
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| Q |
118 |
gcatcaatcaacacttcgtaacactacgacaagttgttgtatgaggaaaaccaaaaatggatatgacattgttggtttgctgaatatctgtttttatt-- |
215 |
Q |
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| T |
55339802 |
gcatcaatcaacacttcgtaacactacgactagttgttgtacgaggaaaaccaaaaatggatatgacattgttggtttgctgaatatctgtttttgttgt |
55339901 |
T |
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| Q |
216 |
--------------------gttagtttgtttcttaggccttaagaaatttgatattactttggcccttagtgtttgttagtttcttttc-ttgttgtgt |
294 |
Q |
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| T |
55339902 |
tggagttcccccagttgtttgttagtttgtttcttaggccttaagaaatttgatattactttggcccttggtgtttgttagtttcttttcattgttgtgt |
55340001 |
T |
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| Q |
295 |
atgatcctccttctaaacatggtgtagctcctttgattaggccatgattcctaaatagattgtgccttgacccagtccgaaatagtatgt |
384 |
Q |
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| T |
55340002 |
atgatcctccttctaaacatggtgtagctcctttgattaggccatgattcctaaatagattgtgccttgacccagtccgaaatagtatgt |
55340091 |
T |
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