View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10046_low_8 (Length: 326)
Name: NF10046_low_8
Description: NF10046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10046_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 5568229 - 5567940
Alignment:
| Q |
21 |
catcttacaataaaatttgccattgttataaacttgttctacaccatcgtcttggggcattttttaattcattttgacgcagttagagaatttattggac |
120 |
Q |
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| T |
5568229 |
catcttacaataaaatttgccattgttataaacttgttctacaccatcgtcttggggcattttttaattcattttgacgcagttagagaatttattggac |
5568130 |
T |
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| Q |
121 |
agtgatttatttaacaatgaattaattacttgaggctcggtttggtcttcgtcatggtaatttgtagttgattacatttgactactatgatctagcgtga |
220 |
Q |
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| T |
5568129 |
agtgatttatttaacaatgaattaattacttgaggctcagtttggtcttcgtcatggtaatttgtagttaattgcatctgactactatgatccagcgtga |
5568030 |
T |
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| Q |
221 |
atgacacatagtgaaataataataaaatagatgcaatcaactacaagttttgatatttataaataaacaaatggttaaatatgcaattcgtc |
312 |
Q |
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| T |
5568029 |
atg--acatagtgaaataataataaaatagatgcaatcaactacaagtcttgatatttataaataaacaaaggcataaatatgcaattcgtc |
5567940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 5564072 - 5564130
Alignment:
| Q |
144 |
aattacttgaggctcggtttggtcttcgtcatggtaatttgtagttgattacatttgac |
202 |
Q |
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| T |
5564072 |
aattacttgaggctcagtttggtctccatcatcgttatttgtagttgattacatttgac |
5564130 |
T |
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