View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_1 (Length: 543)
Name: NF10047_low_1
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Original strand, 45001391 - 45001913
Alignment:
| Q |
17 |
aatatgaacccacttttgattaaaacaaaaacatatgagggtggttggtggtggtagctatgataccaagagcaaaacaaaaacaacagttgtgcacttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45001391 |
aatatgaacccacttttgattaaaacaaaaacatatgagggtggttggtggtggtacttatgataccaagagcaaaacaaaaacaacaattgtgcacttg |
45001490 |
T |
|
| Q |
117 |
tactccatcttttttgaaatggaaataatgaaatgaagatagagtcttttcttcttccactaaagaatcccaaattagcaatgaagaggaattgcaacga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45001491 |
tactccatcttttttgaaatggaaataatgaaatgaagatagagtcttttcttcttccactaaagaatcccaaattagcaatgaagaggaattgcaacga |
45001590 |
T |
|
| Q |
217 |
tgttgtcagtatttatacattcccccgcattcgcatgctgtaactttgccgcaatggattctcctccctcctccgttgtcgtccttctcattgcgctcg- |
315 |
Q |
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|| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45001591 |
tgctatcagtatttatacattcccccgcattcgtatgctgtaactttgccgcaatggattctcctccctcctccattgtcgtccttctcattgcgctcgc |
45001690 |
T |
|
| Q |
316 |
gctggccacctgttgcttcgccactcaccgtttcaaagcacccgcacgggtcgttcttcctgatgaaatggtgctttcagggccaccgtcgccatattca |
415 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45001691 |
gatggccacctgttgcttcgccactcaccgtttcaaagcacccgcgcatgttgttcttcctgatgaaatggtgctttctgggccaccgtcgccatattca |
45001790 |
T |
|
| Q |
416 |
tctgacagtgaggcagcagacttgtttgttttgtattcattaaacggttgcttcttcttctaccaaccatttcatcatcgtttgttgttgcaatatgtgg |
515 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45001791 |
tctgacagtgaggcagcatacttgtttgttttgtattcattaaacggttgcttcttcttctaccaaccatttcatcatcgtttgctgttgcaatatgtgg |
45001890 |
T |
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| Q |
516 |
aactggaatctctctctgcttct |
538 |
Q |
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||||||||||||||||| ||||| |
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| T |
45001891 |
aactggaatctctctctacttct |
45001913 |
T |
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