View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10047_low_10 (Length: 355)

Name: NF10047_low_10
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10047_low_10
NF10047_low_10
[»] chr2 (1 HSPs)
chr2 (50-345)||(38892305-38892601)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 50 - 345
Target Start/End: Original strand, 38892305 - 38892601
Alignment:
Q  50 ctaagtaccaagtctttccaagctagaaccttccaaaacaacacttccaaaccaaaagctcttatattagttgttgggtggtctgaaggagcactgaaag 149  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38892305 ctaagtaccaagtctttcctagctagaaccttccaaaacaacacttccaaaccaaaagctcttatattagttgttgggtggtctgaaggagcacggaaag 38892404  T
Q  150 caacaacaaaccaattacctatgattataagcgatggagacatcatatcttcgctaaaaaccttaaaacatt-atgtatatatgtcacatctcatatata 248  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  38892405 caacagcgaaccaattacctatgattataagcgatggagacatcatatcttcgctcaaaaccttaaaacattaatgtgtatatgtcacatctcatatata 38892504  T
Q  249 ttcaacgttttgtctattcataattgatgtagaactaatcactcaaacttaaatccaacaatttgaaatctcacttttcacttgtctctcttctctg 345  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  38892505 ttcaacgttttgtctattcataattgatgtagaattaatcactcaaacttaatcccaacaatttgaaatctcacttttcacttgtctctcttctctg 38892601  T

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