View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_11 (Length: 354)
Name: NF10047_low_11
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 40715531 - 40715386
Alignment:
| Q |
1 |
acatgaaccaaccaatggagagcacatgcttaatactgctagtttttattttcaatgttatatattcattaaaataattctttcatcatgagtatcttgt |
100 |
Q |
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| T |
40715531 |
acatgaaccaaccaatggagagcacatgcttaatactgctagtatttattttcaatgttatatattcattaaaaaaattcttttatcatgagcatcttgt |
40715432 |
T |
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| Q |
101 |
ttgaaactttgataaatttttacattatatactatgaaatggtgag |
146 |
Q |
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| T |
40715431 |
ttgaaactttgataaatttttacattatatactatgaaatggtgag |
40715386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 210 - 339
Target Start/End: Complemental strand, 40715378 - 40715249
Alignment:
| Q |
210 |
ttataatagggtagtttatctgaattctgtggtatttgtctctgaaattttggcattttaattatcttattatgttttttgttgcatactgagttgttgg |
309 |
Q |
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| T |
40715378 |
ttataatagggtagtttatctgaattctgtggtatttgtctttgaaattttggcattttaattttcttattatgttttttgttgcatactgagttgttgg |
40715279 |
T |
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| Q |
310 |
tattcttaaatcattcacaggagcagattt |
339 |
Q |
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| T |
40715278 |
tattcttaaatcattcacaggagtagattt |
40715249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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