View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_12 (Length: 333)
Name: NF10047_low_12
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 114 - 322
Target Start/End: Original strand, 4356466 - 4356670
Alignment:
| Q |
114 |
cagttatgttactatcaatttctcttt-atattttagtatctttctatagcccatgttatattaatttcaacgaagcatgtgtgttcttttgctggaagg |
212 |
Q |
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| T |
4356466 |
cagttatgttactatcaatttctcttttatattctggtatctttctatagcccatgttatattaatttcaacgaagcatgtgtgttcttttgctggaagg |
4356565 |
T |
|
| Q |
213 |
aaaattaaattaaatacatatcagtgcacttcatatttacaggattattctgttccattatattaaatggaaaatatattaaaaggaacataaatcagtt |
312 |
Q |
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| T |
4356566 |
aaaattaaattaaatacatatcagtgcacttgatatttacaggattattctgttcc-----attaaatggaaaatatattaaaaggaacataaatcagtt |
4356660 |
T |
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| Q |
313 |
gagatttcat |
322 |
Q |
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||||||||| |
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| T |
4356661 |
aagatttcat |
4356670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 4674445 - 4674383
Alignment:
| Q |
114 |
cagttatgttactatcaatttctc-tttatattttagtatctttctatagcccatgttatatt |
175 |
Q |
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| T |
4674445 |
cagttatgttactatcaatttctcttttatattctggtatctttctatagctcatgttatatt |
4674383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 4674310 - 4674199
Alignment:
| Q |
173 |
attaatttcaacgaagcatgtgtgttcttttgctggaaggaaaattaaattaaatacatatcagtgcacttcata-tttacaggattattctgttccatt |
271 |
Q |
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| T |
4674310 |
attaaattcaaccaagcatgtgtgttcttttgctagaaggaa-----aatttaatacatataagtacacctgatattttacaggattattctgttcc--- |
4674219 |
T |
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| Q |
272 |
atattaaatggaaaatatatta |
293 |
Q |
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| T |
4674218 |
--attaaatggaaaatatatta |
4674199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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