View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_14 (Length: 322)
Name: NF10047_low_14
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 1395805 - 1395985
Alignment:
| Q |
6 |
aggaacggaggtagtaatacatatttccgactcttcttctcacatttaaattatttgtttcttttagttaatggtcaagtgcgatttttatcatttgaac |
105 |
Q |
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| T |
1395805 |
aggaacggaggtagtaatgcatatttccgactcttcttctcacatttaaattatttgtttcttttagttaatggtcaagtgtgatttttatcatttgaac |
1395904 |
T |
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| Q |
106 |
ctgaaccacttattttctttgttcaattaatgaacataatctttgtatatcagtttgtggtaatcaagaaataacgaacta |
186 |
Q |
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| T |
1395905 |
ctgaactacttattttctttgttcaattaatgaacataatctttgtatatcagtttgtggtaatcaagaaataacgaacta |
1395985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 1406689 - 1406838
Alignment:
| Q |
40 |
tcttctcacatttaaattatttgtttcttttagttaatggtcaagtgcgatt---tttatcatttgaacctgaaccacttattttctttgttcaattaat |
136 |
Q |
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| T |
1406689 |
tcttctcacatttaaattattcgtttcttttagttaatggtcaagcgcgactacttttatcatttgaacctgaactacttattttctttgttcaattaat |
1406788 |
T |
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| Q |
137 |
gaacataatctttgtatatcagtttgtggtaatcaagaaataacgaacta |
186 |
Q |
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| T |
1406789 |
gaacataatctttgtatatcagtttctggtaatcaagaaataacgaacta |
1406838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 1406909 - 1406955
Alignment:
| Q |
261 |
gtgtgcccttgcggttgtctgatcatgcgttgttgtttagttcattg |
307 |
Q |
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| T |
1406909 |
gtgtgcccttgcggttgtctgatcatgcgttgttgtttagttcattg |
1406955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 34968383 - 34968459
Alignment:
| Q |
71 |
agttaatggtcaagtgcgatttttatcatttgaacctgaaccacttattttctttgttcaattaatgaacataatct |
147 |
Q |
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| T |
34968383 |
agttaacggtcaaatgtgacttgtgtcatttgatcctcaactacttatattctttgttcaattaattaacataatct |
34968459 |
T |
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