View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_15 (Length: 322)
Name: NF10047_low_15
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 63 - 300
Target Start/End: Original strand, 24746451 - 24746691
Alignment:
| Q |
63 |
atatatgtggtatctaaattaatggtatacgaagacgtgaagcgtaca-tcacatggactaaaaatattacccaattaaagaccacttcactggttagga |
161 |
Q |
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| T |
24746451 |
atatatgtggtatattaattaatggtatacgaagacgtgatacgtacaatcacatggactaaaaatattacccaattaaagaccatttcattgattatga |
24746550 |
T |
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| Q |
162 |
catgtatcgaccgaccatcacttactgctcattattgactccaca--ccacagaccacgtcatagatatttctgttgtacattcatgtagaaaatacaaa |
259 |
Q |
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| T |
24746551 |
catgtatcgactgaccatcacttactgctcattattgactccacacaccacagaccacgtcatagatatttctgttgtacattcatgtagaaaaaacaaa |
24746650 |
T |
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| Q |
260 |
gaggaaattaggtagaagctttaataatactcacttttcat |
300 |
Q |
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| T |
24746651 |
gaggaaattaggtaggagccttaataatactcacttttcat |
24746691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 24793327 - 24793438
Alignment:
| Q |
62 |
tatatatgtggtatctaaattaatggtatacgaagacgtgaagcgtacatcacatggactaaaaatattacccaattaaagaccacttcactggttagga |
161 |
Q |
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| T |
24793327 |
tatatatttggtatcttaattaatggtatacgaagacgtgaagcgtgcatcacatggactgaaaatattacccaattaaaaaccactgcactgattatga |
24793426 |
T |
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| Q |
162 |
catgtatcgacc |
173 |
Q |
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| T |
24793427 |
catgtatggacc |
24793438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 24784662 - 24784591
Alignment:
| Q |
100 |
tgaagcgtacatcacatggactaaaaatattacc---caattaaagaccacttcactggttaggacatgtat |
168 |
Q |
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| T |
24784662 |
tgaagcgtgcaccacatggactaaaaatattactacgcaattaaagaccacttcactgcttatgacatgtat |
24784591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 24538537 - 24538499
Alignment:
| Q |
173 |
cgaccatcacttactgctcattattgactccacaccaca |
211 |
Q |
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| T |
24538537 |
cgaccatcacttgctgctcattattgactccacaccaca |
24538499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 24533526 - 24533471
Alignment:
| Q |
81 |
ttaatggtatacgaagacgtgaagcgtacatcacatggactaaaaatattacccaatt |
138 |
Q |
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| T |
24533526 |
ttaatggtataggaagatgtgaagcatgcatcacatggact--aaatattacccaatt |
24533471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 24784451 - 24784410
Alignment:
| Q |
81 |
ttaatggtatacgaagacgtgaagcgtacatcacatggacta |
122 |
Q |
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| T |
24784451 |
ttaatggtctacgaagacgtgaatcgtgcatcacatggacta |
24784410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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