View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_17 (Length: 256)
Name: NF10047_low_17
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 4487754 - 4487515
Alignment:
| Q |
4 |
atagaggaaagattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgt |
103 |
Q |
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| T |
4487754 |
atagaggaaaggttgccgtatgtggattttacagtgccatatgcagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgt |
4487655 |
T |
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| Q |
104 |
ttatgaagccatttaccttggaattgtggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccaga |
203 |
Q |
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| T |
4487654 |
ttatgaagccatttaccttggaattatggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccaga |
4487555 |
T |
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| Q |
204 |
gtttcagctcagcacagctctttggtttaccttctcctct |
243 |
Q |
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| T |
4487554 |
gtttcagctcagtacagctctttggtttaccttctcctct |
4487515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 4482775 - 4482570
Alignment:
| Q |
4 |
atagaggaaagattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgt |
103 |
Q |
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| T |
4482775 |
atagaggaaagattgaggtatgtggattttacattgccatatgcagaatcaggattgtcgatgatagttccattgaagacggaagattcagcatggatgt |
4482676 |
T |
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| Q |
104 |
ttatgaagccatttaccttggaattgtggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccaga |
203 |
Q |
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| T |
4482675 |
ttatgaagccatttacctgggaattgtggctgggtacaggtgcaatcttgatttacacaatgtgtgttgtttggtatctagagagagtacccaacccaga |
4482576 |
T |
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| Q |
204 |
gtttca |
209 |
Q |
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|||||| |
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| T |
4482575 |
gtttca |
4482570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 4482553 - 4482516
Alignment:
| Q |
208 |
cagctcagcacagctctttggtttaccttctcctctct |
245 |
Q |
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| T |
4482553 |
cagctcagcacagctctttggtttaccttctcttctct |
4482516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 34606395 - 34606591
Alignment:
| Q |
13 |
agattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagc |
112 |
Q |
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| T |
34606395 |
agattgcaatatgtagattttactgtgccatatgcagagtcaggattgtcgatgatagttacggagaagtctgaagaatcagcatggatgtttatgaagc |
34606494 |
T |
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| Q |
113 |
catttaccttggaattgtggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccagagtttca |
209 |
Q |
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| T |
34606495 |
ccttcacctggcaaatgtgggtggtaactggtgtcatcttgatttatacaatggtagtagtgtggtacctggagagggaagataatccagagtttca |
34606591 |
T |
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