View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10047_low_2 (Length: 479)
Name: NF10047_low_2
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 463
Target Start/End: Complemental strand, 8287966 - 8287515
Alignment:
| Q |
14 |
agataacaacataaactaaaagaaatttacagacaaattaaagatggttttcggagactccagaaaagcgtaccttctcgatgatttaccgaatccaccc |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8287966 |
agataacaacataaactaaaagaaaattacagacaaattaaagatggtttccggaaactccagaaaagcgtacctcctcgatgttttaccgaatccaccc |
8287867 |
T |
|
| Q |
114 |
atgcctaaggatgttgatccacatagttgtggctgatcttcgactgtcattacacgcat--gagagccaaataaacaaaagtccttaaatgtcttgaatc |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8287866 |
atgcctaaggatgtcgatccacatagttgtgactgatcttcgactgtcattgcacgcatatgagagccaaataaacaaaagtccctaaatgtcttgaatc |
8287767 |
T |
|
| Q |
212 |
agagttatgcagtcttgtgttcacatgggaaatgtataaatataagagaatgaacaaattggttacaactcactaagggactaaggaatctttctttaca |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
8287766 |
agagttatgcaatcttgtgttcacatgggaaatgtataaatataagagaatgaagaaattggttacagctcactaaaggactaaggaatctttctttgca |
8287667 |
T |
|
| Q |
312 |
tgtgtggtcctggcgggttgctttcatgcatgtctagtgccagtctttttccattaagacagcataaatacaagaatttttctttgaaggagatgtggaa |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8287666 |
tgtgtggtcctggtgggttgctttcatgcatgtctagtgccagtctttttccattaagacagcataaatacaagaatttttctttgaaggagatgtggaa |
8287567 |
T |
|
| Q |
412 |
atgtaacactaattatctttgagtgaaatgtgaaaactttgagagaaaactt |
463 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8287566 |
atgtaacactaattatctttgagtgaagtgtgaaaactttgagagaaaactt |
8287515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 8269584 - 8269518
Alignment:
| Q |
98 |
tttaccgaatccacccatgcctaaggatgttgatccacatagttgtggctgatcttcgactgtcatt |
164 |
Q |
| |
|
|||||||||||| ||||| || |||||||||| |||||||||||||||| ||||||| || |||||| |
|
|
| T |
8269584 |
tttaccgaatccgcccatccccaaggatgttgttccacatagttgtggccgatcttcaaccgtcatt |
8269518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 37646647 - 37646590
Alignment:
| Q |
14 |
agataacaacataaactaaaagaaatttacagacaaattaaagatggttttcggagac |
71 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
37646647 |
agataacaacataaactaaaagaaaattatagacaaattaaagatggtttccggagac |
37646590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 1250825 - 1250767
Alignment:
| Q |
98 |
tttaccgaatccacccatgcctaaggatgttgatccacatagttgtggctgatcttcga |
156 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1250825 |
tttaccgaatccacccatccccaaggatgttgctccacatagttgtggccgatcttcga |
1250767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 26585362 - 26585307
Alignment:
| Q |
98 |
tttaccgaatccacccatgcctaaggatgttgatccacatagttgtggctgatctt |
153 |
Q |
| |
|
|||||||||||||||||| || |||| ||||| |||||||||||||||| |||||| |
|
|
| T |
26585362 |
tttaccgaatccacccattcccaaggttgttgctccacatagttgtggccgatctt |
26585307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University