View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_4 (Length: 433)
Name: NF10047_low_4
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_4 |
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| [»] scaffold0332 (2 HSPs) |
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Alignment Details
Target: scaffold0332 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 9967 - 10234
Alignment:
| Q |
19 |
attaggatttttcagtttttcagtttcatagttttgcattcgcaacaatgaagtttcgttacgccatggtttgttcatccaaccaaaacagaagcatgga |
118 |
Q |
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| T |
9967 |
attaggatttttcagtttttcagtttcatagttttgcattcgcaacaatgaagtttcgttacgccatggtttgttcatccaaccaaaacagaagcatgga |
10066 |
T |
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| Q |
119 |
agcacactttcttttcaaaagacaagggttcgatgtatcttcttatggaacaggtacccacgttaagctcccaggtccttccctcagagaaccaaatgtc |
218 |
Q |
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| T |
10067 |
agcacactttcttttcaaaagacaagggttcgatgtatcttcttatggaacaggtacccacgttaagctcccaggtccttccctcagagaaccaaatgtc |
10166 |
T |
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| Q |
219 |
tatgaatttggaactccttacaaatacatgcttgatgagcttcgtagaaaagaccctgaactgtatcc |
286 |
Q |
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| T |
10167 |
tatgaatttggaactccttacaaatacatgcttgatgagcttcgtagaaaagaccctgaactgtatcc |
10234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0332; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 10299 - 10372
Alignment:
| Q |
351 |
cttaagcacaagtgaggtgtataatgtgtttaatgcttgttatttacaattttgattagtttattgatgtccat |
424 |
Q |
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| T |
10299 |
cttaagcacaagtgaggtgtataatgtgtttaatgcttgttatttacacttttgattagtttattgatgaccat |
10372 |
T |
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