View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_5 (Length: 432)
Name: NF10047_low_5
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_5 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 37 - 281
Target Start/End: Complemental strand, 359461 - 359217
Alignment:
| Q |
37 |
ttcagttatcagctttcgacattttcaagtttttcgttgcgaatcctaataagcctcgagaagtgaaaattattctatgcaagaataaggaaaaactgct |
136 |
Q |
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| T |
359461 |
ttcagttatcagctttcgacattttcaagtttttcgttgcgaatcctaataagcctcgagaagtgaaaattattctatgcaagaataaggaaaaactgtt |
359362 |
T |
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| Q |
137 |
agaattgcttcataaattatctctggaaaaagattcaaaagaagatgagcaatttaaggaggaaaaggagtttatcatcaaagaaattgaaagaatatca |
236 |
Q |
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| T |
359361 |
agaattgcttcataaattatctctggtaaaagattcaaaagaagatgagcaatttaaggaggaaaaggagtatatcatcaaagaaattgaaagaatatca |
359262 |
T |
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| Q |
237 |
atctaagtgatttattctatgccatttttgtttgaggtacactga |
281 |
Q |
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| T |
359261 |
atctaagtgatttattctatgccatttttgtttgaggtacactga |
359217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 427
Target Start/End: Complemental strand, 359148 - 359073
Alignment:
| Q |
352 |
ctttgccttaatttagtatttgttagcttttcagttggttactttctgtacgtacattgagagtacctttgcttct |
427 |
Q |
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| T |
359148 |
ctttgccttaatgtagtatttgttagctttttagttggttactttctgaatgtacatttagagtacctttgtttct |
359073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 7112957 - 7113036
Alignment:
| Q |
176 |
agaagatgagcaatttaaggaggaaaaggagtttatcatcaaagaaattgaaagaatatcaatctaagtgatttattctat |
256 |
Q |
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| T |
7112957 |
agaagatgagcaatttgaagaggaaaaagagtttatcatcaaggaaattgaaagaatatcagtctaa-taatttattctat |
7113036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 7112718 - 7112819
Alignment:
| Q |
67 |
ttttcgttgcgaatcctaataagcctcgagaagtgaaaattattctatgcaagaataaggaaaaactgctagaattgcttcataaattatctctggaaaa |
166 |
Q |
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|||||||||| |||||||||||||| ||||| || ||||| |||||| | ||||| |||| || ||||||||||| |||||||| |||||| || ||| |
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| T |
7112718 |
ttttcgttgctaatcctaataagccgcgagatgtaaaaataattctagggaagaacaaggggaagctgctagaattacttcataatctatctccgggaaa |
7112817 |
T |
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| Q |
167 |
ag |
168 |
Q |
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|| |
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| T |
7112818 |
ag |
7112819 |
T |
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