View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_7 (Length: 391)
Name: NF10047_low_7
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 4487939 - 4488295
Alignment:
| Q |
16 |
acatcatgacagaatagcctagtattgagttgatagggaggaggatgataatcaaataaaaaccaaaattaagcatttcatttcaaagagaagaaaagat |
115 |
Q |
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| T |
4487939 |
acatcatcacagaaaggactagtattgagttgatagggaggaggatgataatcaaatagaaaccaaaattaagcatttcatttcaaagagaagaaaagat |
4488038 |
T |
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| Q |
116 |
agatttgataccttgttatagacaagctgaaccaaatcattataggttccattgatgggataatacctatatggcagatcataccccaaatggttcagta |
215 |
Q |
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| T |
4488039 |
agatttgataccttgttatagacaagctgaaccaaatcattataggttccatcgatgggataataactatatggcagatcgtaccccaaatggttcagta |
4488138 |
T |
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| Q |
216 |
catgctcaaaaatttcaatgcagaatccagtatatttatcaggctctccattctggccatactctaccttgacaaacctggaaaacgaggttctgcttct |
315 |
Q |
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| T |
4488139 |
catgctcaaaaatttcaatgcagaatccagtatatttatcaggctctccattctggccatacacaaccttgacaaacctggaaaacgaggttctgcttct |
4488238 |
T |
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| Q |
316 |
gactgcaattctcaatggannnnnnnctgtgggcatattccagccctttggaatacg |
372 |
Q |
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| T |
4488239 |
gactgcaattctcaatggatttttttctgtgggcatgttccagccctttggaatacg |
4488295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 45 - 300
Target Start/End: Original strand, 4483001 - 4483257
Alignment:
| Q |
45 |
ttgatagggaggaggatgataatcaaataaaaaccaaaattaagcatttcatttcaaagagaagaaaagatagatttgataccttgttatagacaagctg |
144 |
Q |
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| T |
4483001 |
ttgataggggggataatgataataaaatagaaaccaaaataaaacatttcatttcaaaga-----aaagatagatttgataccttgttatagacaagctg |
4483095 |
T |
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| Q |
145 |
aaccaaatcattataggttccattgatgggataatacctatat------ggcagatcataccccaaatggttcagtacatgctcaaaaatttcaatgcag |
238 |
Q |
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| T |
4483096 |
aaccatatcattataggttccattgatgggataatacctatatggccgaggcagaccgtaccccaaatggtttagcacatgctcaaaaatatcaatgcag |
4483195 |
T |
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| Q |
239 |
aatccagtatatttatcaggctctccattctggccatactctaccttgacaaacctggaaaa |
300 |
Q |
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| T |
4483196 |
aatccactatatttatcaggctttccattctggccatactcaaccttgacatacttggaaaa |
4483257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 34606071 - 34605943
Alignment:
| Q |
124 |
taccttgttatagacaagctgaaccaaatcattataggttccattgatgggataatacctatatggcagatcata-ccccaaatggttcagtacatgctc |
222 |
Q |
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|||||||||||| ||||| ||||||| ||||||||||||| | |||||||||||||| |||||| |||||||| ||| |||| ||| | || | ||| |
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| T |
34606071 |
taccttgttataaacaagttgaaccagatcattataggttgcgttgatgggataatagtcatatggaagatcatagcccaaaattgtt-aaaaccttctc |
34605973 |
T |
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| Q |
223 |
aaaaatttcaatgcagaatccagtatattt |
252 |
Q |
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| T |
34605972 |
aaaaatttcaatgcaaaatccactatattt |
34605943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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