View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10047_low_8 (Length: 375)
Name: NF10047_low_8
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10047_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 40994285 - 40994520
Alignment:
| Q |
18 |
gttaatgttgtttagcacttgtaggtcttacgtgcatctaataatcacgaggttctaattctttttgtcatgatctcatgtaagcgctcccattaaacat |
117 |
Q |
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| T |
40994285 |
gttaatgttgtttagcacttgtaggtcttacgtgcatctaataatcacgaggttctaattctttttgtcatgatctcatgtaagcgctcccattaaacat |
40994384 |
T |
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| Q |
118 |
gattttattacgtaggttgtaaatctcacaccacccacttgtaagggaatacaaacatcattaagcccttgatgagtttacccttttaatactacaaagg |
217 |
Q |
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| T |
40994385 |
gattttattacgtaggttgtaaatctcacaccacccacttgtaagggaatacaaacatcattaagcccttgatgagtttacccttttaatactacaaagg |
40994484 |
T |
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| Q |
218 |
ctttctcactcacattaagtggagaccaaaaattaa |
253 |
Q |
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| T |
40994485 |
ctttctcactcacattaagtgaagaccaaaaattaa |
40994520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 40994518 - 40994592
Alignment:
| Q |
291 |
taacatgatcttatttatataaatctccttagtagaattttcaacctggggaggatgttgaactcctatcctttg |
365 |
Q |
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| T |
40994518 |
taacatgatcttatttatataaatctccttaatagaattttcaacctggggaggatgttgaactcctatcctttg |
40994592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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