View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10047_low_9 (Length: 367)

Name: NF10047_low_9
Description: NF10047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10047_low_9
NF10047_low_9
[»] chr6 (8 HSPs)
chr6 (1-352)||(27924260-27924625)
chr6 (165-345)||(28005391-28005571)
chr6 (251-303)||(26559160-26559212)
chr6 (248-303)||(27894130-27894185)
chr6 (247-351)||(2460068-2460172)
chr6 (249-330)||(20861617-20861698)
chr6 (247-284)||(35070571-35070608)
chr6 (247-303)||(2457038-2457094)
[»] chr7 (5 HSPs)
chr7 (247-351)||(46082085-46082189)
chr7 (249-351)||(33894676-33894778)
chr7 (264-351)||(36598290-36598377)
chr7 (244-287)||(46609002-46609045)
chr7 (264-344)||(27517239-27517319)
[»] chr8 (9 HSPs)
chr8 (245-351)||(11569372-11569478)
chr8 (247-303)||(44236740-44236796)
chr8 (264-351)||(6950371-6950458)
chr8 (249-288)||(9130238-9130277)
chr8 (252-302)||(8629211-8629261)
chr8 (269-351)||(13000363-13000445)
chr8 (247-351)||(9700050-9700154)
chr8 (264-324)||(24326107-24326167)
chr8 (247-351)||(30191058-30191162)
[»] chr3 (6 HSPs)
chr3 (249-342)||(50211793-50211886)
chr3 (255-334)||(22667469-22667548)
chr3 (255-334)||(22724108-22724187)
chr3 (255-317)||(27795938-27796000)
chr3 (243-288)||(38902177-38902222)
chr3 (307-351)||(36200145-36200189)
[»] chr2 (2 HSPs)
chr2 (247-303)||(15370240-15370296)
chr2 (253-303)||(33981220-33981270)
[»] chr5 (6 HSPs)
chr5 (246-317)||(25720333-25720404)
chr5 (247-290)||(42034170-42034213)
chr5 (265-330)||(41016248-41016313)
chr5 (251-295)||(10771809-10771853)
chr5 (244-288)||(16937797-16937841)
chr5 (250-350)||(26516457-26516557)
[»] chr4 (8 HSPs)
chr4 (247-351)||(27123269-27123373)
chr4 (244-324)||(46187823-46187903)
chr4 (247-288)||(18815135-18815176)
chr4 (254-303)||(52172822-52172871)
chr4 (247-288)||(54426155-54426196)
chr4 (247-303)||(26782-26837)
chr4 (251-351)||(19304975-19305075)
chr4 (250-290)||(32831438-32831478)
[»] chr1 (6 HSPs)
chr1 (264-344)||(5591901-5591980)
chr1 (247-351)||(32515358-32515462)
chr1 (251-351)||(4549462-4549563)
chr1 (249-301)||(4276569-4276621)
chr1 (267-351)||(27140527-27140611)
chr1 (244-344)||(44031914-44032013)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 27924260 - 27924625
Alignment:
Q  1 agagatactacacatgaaagttaacctggttgataaga--------------tcactaacacaacgatactgcaatagtgcaaatgaacagaagagtatg 86  Q
    ||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27924260 agagatactacacatgaaagttaacctggttgataagagatcactgacatgctcactaacacaacgatactgcaatagtgcaaatgaacagaagagtatg 27924359  T
Q  87 aaaaaatggtaagcggcaaatgaacaaaagagtatgaaaaaagcctttcacactaccatgtaaaaaaggtcacccttgtttaagtccgtaatagtttgga 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27924360 aaaaaatggtaagcggcaaatgaacaaaagagtatgaaaaaagcctttcacactaccatgttaaaaaggtcacccttgtttaagtccgtaatagtttgga 27924459  T
Q  187 ttatagtgttctcctacctctaacaactgaattcccctcttcaatttaaacctaggaggacctgtttggattagctcatttgagcttacctactggcata 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27924460 ttatagtgttctcctacctctaacaactgaattcccctcttcaatttaaacctaggaggacctgtttggattagctcatttgagcttacctactggcata 27924559  T
Q  287 agcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgttttt 352  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27924560 agcatttataagactttataagagagtttatgtaaacatcttataacacgtccataagttattttt 27924625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 165 - 345
Target Start/End: Original strand, 28005391 - 28005571
Alignment:
Q  165 tttaagtccgtaatagtttggattatagtgttctcctacctctaacaactgaattcccctcttcaatttaaacctaggaggacctgtttggattagctca 264  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  28005391 tttaagtccttaatagtttggattatagtgttttcctacctctaacaactgaattcccctcttcaatttaaacctcggaggacctgtttagattagctca 28005490  T
Q  265 tttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagt 345  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  28005491 tttgagcttacctactggcataagcacttgtaagactgtttaagagagtttatgtaaacagcttataacacgtacataagt 28005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 26559160 - 26559212
Alignment:
Q  251 tttggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    ||||||||| || ||||||| |||||||||||||||||||||||| |||||||    
T  26559160 tttggattaacttatttgagtttacctactggcataagcatttgtgagactgt 26559212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 27894185 - 27894130
Alignment:
Q  248 ctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    |||||||||||||||||||||||||||||||| | |||||| | |||| |||||||    
T  27894185 ctgtttggattagctcatttgagcttacctacggacataagtacttgtgagactgt 27894130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 2460068 - 2460172
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagtt 346  Q
    ||||||||||||| || |||||||||||   ||| ||||||| | |||| ||||||| | |||||| ||||| ||||| ||||| ||| |||  ||||||    
T  2460068 cctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagtt 2460167  T
Q  347 gtttt 351  Q
    |||||    
T  2460168 gtttt 2460172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 20861617 - 20861698
Alignment:
Q  249 tgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttat 330  Q
    ||||||||||  || ||||||||||||||||||||||||| || ||  ||||| | |  ||||| ||||| |||||||||||    
T  20861617 tgtttggattgtcttatttgagcttacctactggcataagtatatgcgagactttttgggagagcttatgaaaacatcttat 20861698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 35070571 - 35070608
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggca 284  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  35070571 cctgtttggattggcttatttgagcttacctactggca 35070608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 2457094 - 2457038
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    |||||||||||| ||| ||||||| ||| |||| | |||||||| ||||||||||||    
T  2457094 cctgtttggattggcttatttgagattatctaccgacataagcacttgtaagactgt 2457038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 46082189 - 46082085
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagtt 346  Q
    |||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||  | ||||| ||||| ||||| ||||| ||| | |||||||||    
T  46082189 cctgtttggattggctaatttgatcttacctactggcataaacaattttgagactgttaatgagagcttatgaaaacaacttatgacatgaccataagtt 46082090  T
Q  347 gtttt 351  Q
    |||||    
T  46082089 gtttt 46082085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 33894778 - 33894676
Alignment:
Q  249 tgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgt 348  Q
    |||||||||||||| ||||||||||| | | || |||||||| |||| ||||||| |  ||||| ||||| ||||| | ||| ||| |||||||||||||    
T  33894778 tgtttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgt 33894679  T
Q  349 ttt 351  Q
    |||    
T  33894678 ttt 33894676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 36598290 - 36598377
Alignment:
Q  264 atttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgtttt 351  Q
    |||||| |||| |||||| |||||||| |||| ||| ||| | |||||| ||||| ||||||||||| ||| || |||||| ||||||    
T  36598290 atttgaacttaactactgacataagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgtttt 36598377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 46609002 - 46609045
Alignment:
Q  244 ggacctgtttggattagctcatttgagcttacctactggcataa 287  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||    
T  46609002 ggacctgtttggattagcttatttgaacttacctactgacataa 46609045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 27517239 - 27517319
Alignment:
Q  264 atttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataag 344  Q
    ||||||||| | ||||||||||||  | |||| ||||||| | |||||||||||| ||||  || |||||| |||||||||    
T  27517239 atttgagctaagctactggcataattacttgtgagactgtttgagagagtttatggaaaccactcataacatgtccataag 27517319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 351
Target Start/End: Original strand, 11569372 - 11569478
Alignment:
Q  245 gacctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataag 344  Q
    ||||||||| |||| ||| ||  ||||||| || ||||||||| || |||| ||||||| |||||||| ||||| ||||| ||||| ||| || ||||||    
T  11569372 gacctgttttgattggcttatcagagcttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataag 11569471  T
Q  345 ttgtttt 351  Q
    |||||||    
T  11569472 ttgtttt 11569478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 44236740 - 44236796
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    ||||||||||||| || ||||||| ||| ||||||||||||||| |||| |||||||    
T  44236740 cctgtttggattaccttatttgagtttatctactggcataagcacttgtgagactgt 44236796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 6950458 - 6950371
Alignment:
Q  264 atttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgtttt 351  Q
    ||||||| ||| |||||||||||| ||||||| ||| ||| |  ||||| ||||||||||| | ||| ||| ||| ||||||||||||    
T  6950458 atttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgtttt 6950371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 9130238 - 9130277
Alignment:
Q  249 tgtttggattagctcatttgagcttacctactggcataag 288  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  9130238 tgtttggattagcttatttgagcttatctactggcataag 9130277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 8629261 - 8629211
Alignment:
Q  252 ttggattagctcatttgagcttacctactggcataagcatttgtaagactg 302  Q
    ||||||| ||| |||| |||||||||||||||||||||| |||| ||||||    
T  8629261 ttggatttgcttatttaagcttacctactggcataagcacttgtgagactg 8629211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 13000363 - 13000445
Alignment:
Q  269 agcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgtttt 351  Q
    |||||||||||||||||||||| |||| ||||| | |   ||||||||||  |||| ||||| ||| ||||| ||||||||||    
T  13000363 agcttacctactggcataagcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccacaagttgtttt 13000445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 9700154 - 9700050
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagtt 346  Q
    ||||||||||||| || ||||||||||| ||||| |||||| || |||| ||||| | | |||||| || || || ||  |||| ||| ||||||||| |    
T  9700154 cctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagct 9700055  T
Q  347 gtttt 351  Q
    |||||    
T  9700054 gtttt 9700050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 24326167 - 24326107
Alignment:
Q  264 atttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaaca 324  Q
    ||||||||||| ||||||||||||||| |||| ||||||| |  ||||| ||||| |||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaaca 24326107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 30191058 - 30191162
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagtt 346  Q
    |||||||| || |||| ||||||| ||| ||| ||||||||||| |||| ||||||| |  ||||| ||||| ||||| ||||| ||| || || || ||    
T  30191058 cctgtttgcataagcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaactt 30191157  T
Q  347 gtttt 351  Q
    |||||    
T  30191158 gtttt 30191162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 50211886 - 50211793
Alignment:
Q  249 tgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccata 342  Q
    ||||||||||| || |||| |||||| |||||  |||||||| |||||||||||| | |||||  ||||| ||||| |||||||||| ||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttataacacatccata 50211793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 22667548 - 22667469
Alignment:
Q  255 gattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataaca 334  Q
    |||| ||| ||||||||||| |||||| |||||||| |||| ||||||| | |||||||||||| ||||| | |||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataaca 22667469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 22724187 - 22724108
Alignment:
Q  255 gattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataaca 334  Q
    |||| ||| ||||||||||| |||||| |||||||| |||| ||||||| | |||||||||||| ||||| | |||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataaca 22724108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 27795938 - 27796000
Alignment:
Q  255 gattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttat 317  Q
    |||||||| ||||||||||| ||||||||||||||| |||| | ||||| |||||||| ||||    
T  27795938 gattagcttatttgagcttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 38902222 - 38902177
Alignment:
Q  243 aggacctgtttggattagctcatttgagcttacctactggcataag 288  Q
    |||||||||||| |||  |||||||||||||| |||||||||||||    
T  38902222 aggacctgtttgaattgcctcatttgagcttatctactggcataag 38902177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 36200189 - 36200145
Alignment:
Q  307 agagagtttatgtaaacatcttataacacgtccataagttgtttt 351  Q
    ||||||||| |||||||| ||||| ||| ||||||||||||||||    
T  36200189 agagagtttttgtaaacaacttatgacatgtccataagttgtttt 36200145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 15370240 - 15370296
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    ||||||||||||  || ||||||||||| |||||||||||||||||||| |||||||    
T  15370240 cctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgt 15370296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 33981270 - 33981220
Alignment:
Q  253 tggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    |||||||||| ||||||||||||||||| || |||||| |||| |||||||    
T  33981270 tggattagcttatttgagcttacctactagcttaagcacttgtgagactgt 33981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 25720333 - 25720404
Alignment:
Q  246 acctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttat 317  Q
    ||||||||| ||||||| ||||||| ||| ||||||||||||||| |||| ||||||| | |||||| ||||    
T  25720333 acctgtttgaattagcttatttgaggttatctactggcataagcacttgtgagactgtctgagagagcttat 25720404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 42034213 - 42034170
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagca 290  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  42034213 cctgtttggattagcttatttgagcttacctactgacataagca 42034170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 41016313 - 41016248
Alignment:
Q  265 tttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttat 330  Q
    ||||| |||| ||| | ||||||||| ||||| ||||||||||||||||||||| ||||| |||||    
T  41016313 tttgaacttatctattagcataagcacttgtaggactgtataagagagtttatggaaacaacttat 41016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 10771809 - 10771853
Alignment:
Q  251 tttggattagctcatttgagcttacctactggcataagcatttgt 295  Q
    |||||||| ||| ||||||||||| ||||||||||||||| ||||    
T  10771809 tttggattggcttatttgagcttatctactggcataagcacttgt 10771853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 16937797 - 16937841
Alignment:
Q  244 ggacctgtttggattagctcatttgagcttacctactggcataag 288  Q
    ||||||||||||||| ||| ||||||||||| ||||| |||||||    
T  16937797 ggacctgtttggattggcttatttgagcttatctactagcataag 16937841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 26516557 - 26516457
Alignment:
Q  250 gtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgtt 349  Q
    ||||| ||||||| ||||||| |||  ||||||||||||||  |||  || ||| |||||||| ||||| ||||| ||||| | | |||||| |||||||    
T  26516557 gtttgaattagcttatttgagtttatttactggcataagcacctgtgggaatgtttaagagagcttatgaaaacagcttatgatatgtccattagttgtt 26516458  T
Q  350 t 350  Q
    |    
T  26516457 t 26516457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 27123269 - 27123373
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagtt 346  Q
    ||||||||||||| || |||||||||||   ||| ||||||| | |||| ||||||| | |||||| ||||| ||||| ||||| ||| |||  ||||||    
T  27123269 cctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagtt 27123368  T
Q  347 gtttt 351  Q
    |||||    
T  27123369 gtttt 27123373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 46187823 - 46187903
Alignment:
Q  244 ggacctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaaca 324  Q
    |||| ||||||||| | || ||||||||||| |||||||||||| || || | ||||||| |||||| ||||||| |||||    
T  46187823 ggacatgtttggatgatcttatttgagcttatctactggcataaacacttatgagactgtttaagagggtttatggaaaca 46187903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 18815176 - 18815135
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataag 288  Q
    |||||||||||| ||| ||||||||||||||||| |||||||    
T  18815176 cctgtttggattggcttatttgagcttacctactagcataag 18815135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 52172871 - 52172822
Alignment:
Q  254 ggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    ||||| ||| |||||||||||| |||||||||||| |||||| |||||||    
T  52172871 ggattggcttatttgagcttacatactggcataagtatttgtgagactgt 52172822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 54426196 - 54426155
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataag 288  Q
    |||||||||||| ||| ||||||||||| |||||||||||||    
T  54426196 cctgtttggattggcttatttgagcttatctactggcataag 54426155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 26782 - 26837
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgt 303  Q
    |||||||||||| ||| ||||||||||| | |||||||||||| ||||| |||||||    
T  26782 cctgtttggattggcttatttgagcttatcaactggcataagc-tttgttagactgt 26837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 19305075 - 19304975
Alignment:
Q  251 tttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgttt 350  Q
    ||||||||  || ||||||| ||| ||| || ||||||||||||| ||| ||| |  |||| ||| || ||||| ||||| ||| |||||||||||||||    
T  19305075 tttggattgacttatttgagattatctattgacataagcatttgtgagattgtgtgggagaatttgtggaaacagcttatgacatgtccataagttgttt 19304976  T
Q  351 t 351  Q
    |    
T  19304975 t 19304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 32831438 - 32831478
Alignment:
Q  250 gtttggattagctcatttgagcttacctactggcataagca 290  Q
    ||||||||| ||||||||||||||| |||||| ||||||||    
T  32831438 gtttggattggctcatttgagcttatctactgacataagca 32831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 5591901 - 5591980
Alignment:
Q  264 atttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataag 344  Q
    ||||||||||| ||||||| |||||||| ||| ||||||| | |||||| ||||| ||||| ||||| |||||| ||||||    
T  5591901 atttgagcttatctactggtataagcatgtgt-agactgtttgagagagcttatgaaaacagcttatgacacgtgcataag 5591980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 32515358 - 32515462
Alignment:
Q  247 cctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagtt 346  Q
    |||||||||||||||  ||||||| ||| |||||  |||||||| |||| ||||||| |  ||||| ||||| ||||| | ||| ||| ||| |||||||    
T  32515358 cctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagtt 32515457  T
Q  347 gtttt 351  Q
    |||||    
T  32515458 gtttt 32515462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 4549462 - 4549563
Alignment:
Q  251 tttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccat-aagttgtt 349  Q
    |||||||| ||| ||||||| ||| |||||||||||||||||| | ||||||| |  ||||| ||||  ||||| ||||| ||| ||| || ||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttatgacatgtctataaagttgtt 4549561  T
Q  350 tt 351  Q
    ||    
T  4549562 tt 4549563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 4276569 - 4276621
Alignment:
Q  249 tgtttggattagctcatttgagcttacctactggcataagcatttgtaagact 301  Q
    ||||||||||  || ||||||||||| || ||||||||||||||||| |||||    
T  4276569 tgtttggatttacttatttgagcttatcttctggcataagcatttgttagact 4276621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 27140611 - 27140527
Alignment:
Q  267 tgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataagttgtttt 351  Q
    |||||||| ||| || ||||| || ||||||| || | | |||||||||| | ||||| ||||| ||| ||||||||||||||||    
T  27140611 tgagcttatctattgacataaacaattgtaagtctctttgagagagtttaaggaaacagcttatgacatgtccataagttgtttt 27140527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 44031914 - 44032013
Alignment:
Q  244 ggacctgtttggattagctcatttgagcttacctactggcataagcatttgtaagactgtataagagagtttatgtaaacatcttataacacgtccataa 343  Q
    |||||||||||||||| || |||| || ||  |||||| |||||||| |||| ||||||| || ||||| |||||||| || || || ||| ||||||||    
T  44031914 ggacctgtttggattaactaatttaag-ttttctactgtcataagcacttgttagactgtctaggagagcttatgtaagcagctaatgacatgtccataa 44032012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University