View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10048_high_2 (Length: 253)
Name: NF10048_high_2
Description: NF10048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10048_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 52967333 - 52967096
Alignment:
| Q |
17 |
aggagttgcaaagagttcttgttattttt-gggattcaaacaaggatcggaatttgagaaatgtcaaaagattatcaagaattttgatgaaaatcaagat |
115 |
Q |
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| T |
52967333 |
aggagttgcaaagagttcttgctattttttggggttcaaacaaggatcagaatttgagaaatgtcaaaagattatcaagaattttgatgaaaatcaagat |
52967234 |
T |
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| Q |
116 |
gaaagaattgaatcattgaatttattaatactattatttaagggaaaccacttttgctgattttgtttgttcctttgtttaagaatattcatataatatg |
215 |
Q |
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| T |
52967233 |
gaaagaattgaatcattgaatttattaatactattatttaagggaaaccacttttgctgattttgtttgttcctttgtttaagaatattcatataatatg |
52967134 |
T |
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| Q |
216 |
acgtgaaaagcaggttgatatgaacttattaattttca |
253 |
Q |
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| T |
52967133 |
acgtgaaaagcaggttgatatgaacttattaattttca |
52967096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 52971226 - 52971114
Alignment:
| Q |
13 |
gcaaaggagttgcaaagagttcttgttatttttgggattcaaacaaggatcggaatttgagaaatgtcaaaagattatcaagaattttgatgaaaatcaa |
112 |
Q |
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| T |
52971226 |
gcaaaggagttgcaaagagttcttgttatttt-gggattgaaacaaggatcagaatttgagaactgccaaaagatgatcacaatttttgatgaaaatcaa |
52971128 |
T |
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| Q |
113 |
gatgaaagaattga |
126 |
Q |
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| T |
52971127 |
gatggaagaattga |
52971114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 2855983 - 2856080
Alignment:
| Q |
42 |
ttttgggattcaaacaaggatcggaatttgagaaatgtcaaaagattatcaagaattttgatgaaaatcaagatgaaagaattga-atcattgaattt |
138 |
Q |
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| T |
2855983 |
ttttgggatttaaggaaggttcggaagttgagaattgtcagaagatgattaagaattttgatgcaaatcaagatggaagaattgatttcattgaattt |
2856080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 2851924 - 2851964
Alignment:
| Q |
86 |
attatcaagaattttgatgaaaatcaagatgaaagaattga |
126 |
Q |
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| T |
2851924 |
attatcaagaatttcgatgaaaatcatgatgaaagaattga |
2851964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 10477932 - 10477986
Alignment:
| Q |
72 |
agaaatgtcaaaagattatcaagaattttgatgaaaatcaagatgaaagaattga |
126 |
Q |
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| T |
10477932 |
agaattgtcagaagatgatcaagaattttgatgaaaaccaagatggaagaattga |
10477986 |
T |
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