View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10048_low_1 (Length: 676)
Name: NF10048_low_1
Description: NF10048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10048_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 358 - 665
Target Start/End: Complemental strand, 42909853 - 42909546
Alignment:
| Q |
358 |
gaaattgcgtggttacattgagtaaaagcacatatattaattaagtagtgtaaactattttcttattagcagggaaagtaactaatctcgtcgtgatacc |
457 |
Q |
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| T |
42909853 |
gaaattgcgtggttacattgagtaaaagcacatatattaattaagtagtgttaactattttcttattagcagggaaagtaactaatctcgtcgtgatacc |
42909754 |
T |
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| Q |
458 |
tcggtctccagcattctccgcatcgaataacacgagagagctcaaacgatatattgtttctccattggataagtgtcctctgcagatcagcagatacaag |
557 |
Q |
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| T |
42909753 |
tcggtctccagcattctccgcatcgaataacacgagagagctcaaacgatatatcgtttctccattggataagtgtcctctgcagatcagcagatacaag |
42909654 |
T |
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| Q |
558 |
gaaactaccactcttctttctttgtgtcgcctcttcaaagaaaaacaaacttacattgatttaagaagcactggtttattgagacaaaatatgtttggtt |
657 |
Q |
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| T |
42909653 |
gaaactaccactcttctttctttgtgtcgcctcttcaaagaaaaacaaacttacattgatttaagaagcactggtttattgagacaaaatatgtttggtt |
42909554 |
T |
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| Q |
658 |
cacaggtt |
665 |
Q |
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| T |
42909553 |
cacaggtt |
42909546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 42910180 - 42909918
Alignment:
| Q |
19 |
ttgaattgacaggacacatgtaataaacaacacctaaaacttgtcatttctcaatacttatgatataatagttatgtaaagaagttaattattgtgtata |
118 |
Q |
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| T |
42910180 |
ttgaattgacaggacacatgtaataaacaacacctaaaacttgtcatttctcaa-------------atagttatgtaaagaagttaattattgtgtata |
42910094 |
T |
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| Q |
119 |
attgtgagcttgcttttctgtcaactttgcaggggagccattactgcaatggcatctagtcggacatgcctaatatcgtcttctgaagactgcacaatct |
218 |
Q |
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| T |
42910093 |
attgtgagcttgcttttctgtcaactttgcaggggagccattactgcaatggcatctagtcggacatgcctaatatcgtcttctgaagactgcacaatct |
42909994 |
T |
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| Q |
219 |
gcatatgggatgtgatcggttggacaatcactcgaagattcgatcttcaaaaatgtaatttgaaatttctaactac |
294 |
Q |
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| T |
42909993 |
gcatatgggatgtgatcggttggacaatcactcgaagattcgatcttcaaaaatgtaatttgaaatttctaactac |
42909918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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