View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10048_low_2 (Length: 577)
Name: NF10048_low_2
Description: NF10048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10048_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 2272353 - 2272905
Alignment:
| Q |
18 |
ggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272353 |
ggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttgg |
2272452 |
T |
|
| Q |
118 |
ctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272453 |
ctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagttt |
2272552 |
T |
|
| Q |
218 |
ataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272553 |
ataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccatt |
2272652 |
T |
|
| Q |
318 |
ctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttat |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272653 |
ctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttat |
2272752 |
T |
|
| Q |
418 |
taatttgaattgtctagcttttcaattggttctgtgtgcttcactgcaacattatttatttcctccaaatggacattg---ttttgttccatgtattgct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2272753 |
taatttgaattgtctagcttttcaattggttctgtgtgcttcactgcaacattatttatttcctccaaatggacattgtttttttgttccatgtattgct |
2272852 |
T |
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| Q |
515 |
tcccatattttgcttcactgtgttaattgatcaatgtggtccatgcacctatg |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272853 |
tcccatattttgcttcactgtgttaattgatcaatgtggtccatgcacctatg |
2272905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
197 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
271 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 46353872 - 46353947
Alignment:
| Q |
45 |
cttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
121 |
Q |
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|||||| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || ||||||||||| |
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| T |
46353872 |
cttcttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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