View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_high_12 (Length: 310)
Name: NF10049A_high_12
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 12035797 - 12035517
Alignment:
| Q |
22 |
tcaatttccatccatgtgcagtctgtatagtgctcaaggtgaatcttttcagcatttgttttttgaatgcagtttggctaagaaaatttggcattggctc |
121 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
12035797 |
tcaatttccatccatgtgcagtctgtgtagtgctcaaggtgaatcttttcagcatttgttttttgaatgcagtttggcttagaaaatttggcatttgctc |
12035698 |
T |
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| Q |
122 |
agctctaagataaatactctctgcaatttcacatctattaccgaggcgctagatatatgcaacagacaaaattctcctctttgcaagatggtggttctag |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12035697 |
agctctaagataaatactctctacaatttcacatctattaccgaggcgctagatatatgcaacaaacaaaattctcctctttgcaagatggtggttctag |
12035598 |
T |
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| Q |
222 |
ttgcagttatatattgcttcaatattatttggtactacaggaatcaaaagaggtttactagtcatcccattcctctctgct |
302 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12035597 |
ttgcagttatatattgcttcaatattattttgtactgcaggaatcaaaagaggtttactagccatcccattcctctctgct |
12035517 |
T |
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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 22163007 - 22162751
Alignment:
| Q |
22 |
tcaatttccatccatgtgcagtctgtatagtgctcaaggtgaatcttttcagcatttgttttttgaatgcagtttggctaagaaaatttggcattggctc |
121 |
Q |
| |
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|||| |||| |||||||| ||||| | || | |||||| ||||| || || |||||||| ||||| |||| | |||||| | |||||||| |||||||| |
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| T |
22163007 |
tcaacttccctccatgtgtagtctttgtaatattcaaggggaatcattccatcatttgttctttgagtgcaatatggctagggaaatttggtattggctc |
22162908 |
T |
|
| Q |
122 |
agctctaagataaatactctctgcaatttcacatctattaccgaggcgctagatatatgcaacagacaaaattctcctctttgcaagatggtggttctag |
221 |
Q |
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| || ||| || ||||||| || || ||| ||||||||| ||||| |||||||| | || || |||| |||||||||||||||| ||||||||||| |
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| T |
22162907 |
ggttcaaagttagatactctttgtaacttctcatctattaatgaggctctagatatttctaataggcaaagttctcctctttgcaagctggtggttctaa |
22162808 |
T |
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| Q |
222 |
ttgcagttatatattgcttcaatattatttggtactacaggaatcaaaagaggttta |
278 |
Q |
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||||||| | ||| ||||||| || |||||||||| |||||||||||| ||||||| |
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| T |
22162807 |
ctgcagttgtttatggcttcaacatcatttggtactgcaggaatcaaaaaaggttta |
22162751 |
T |
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