View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_high_14 (Length: 298)

Name: NF10049A_high_14
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_high_14
NF10049A_high_14
[»] chr3 (1 HSPs)
chr3 (9-298)||(51184259-51184548)
[»] chr4 (2 HSPs)
chr4 (25-298)||(14172579-14172852)
chr4 (213-298)||(48010932-48011017)
[»] scaffold0430 (1 HSPs)
scaffold0430 (73-298)||(807-1032)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 51184548 - 51184259
Alignment:
Q  9 atcagagacagtagatattgatttgtatgaaagaaaagattagacaattaagactagtttggttttatactgcgactttgcaggtttccaagacagtgga 108  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  51184548 atcaaagacagtagatattgatttttatgaaagaaaagattagacaattaagactagtttggttttatactgtgactttgcaggtttccaagacagtaga 51184449  T
Q  109 tattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttatagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51184448 tattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttatagg 51184349  T
Q  209 tttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51184348 tttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctat 51184259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 298
Target Start/End: Original strand, 14172579 - 14172852
Alignment:
Q  25 attgatttgtatgaaagaaaagattagacaattaagactagtttggttttatactgcgactttgcaggtttccaagacagtggatattgtaaaggcgaaa 124  Q
    |||||| |||||||||| ||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  14172579 attgatctgtatgaaaggaaagactaaacaattaagactattttggttttatactgcgattttgcaggtttccaagacagtagatattgtaaaggcgaaa 14172678  T
Q  125 gggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttgagcttttggaga 224  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14172679 gggggaaaggttacaagagaaccagggtctgtcataggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttaagcttttggaga 14172778  T
Q  225 gaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctat 298  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14172779 gaagaactactcgtgaacccttatgcaaagtgatgcttcgagtaggtgaccttgatcgtgtcatagccttctat 14172852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 48010932 - 48011017
Alignment:
Q  213 agcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctat 298  Q
    ||||||||| | |||||||| | || |||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  48010932 agcttttggggtgaagacctgctcgcgaacccctatgcaaagtgatgcttcaagtaggcggccttgatcgtgtcgtagccttctat 48011017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 73 - 298
Target Start/End: Original strand, 807 - 1032
Alignment:
Q  73 ttatactgcgactttgcaggtttccaagacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctata 172  Q
    |||||||| || ||| |||||| ||||||| ||  ||||||||||||  ||| ||||||||||||  |||||||  | | |||| |||| ||| |||| |    
T  807 ttatactgtgatttttcaggttgccaagacggtaaatattgtaaaggaaaaatggggaaaggttatgagagaactggagcctgttaaagatggttctaca 906  T
Q  173 gtaactgcttccgttgaagatcctagtggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcg 272  Q
    ||||||||||   ||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || || |     
T  907 gtaactgcttttattgaagatcctagtggtgataggtttgagcttttggggagaagacttactcgtgaacccttatgcaaagtgatgcttcaagcagaca 1006  T
Q  273 accttgatcgtgtcatagccttctat 298  Q
    |||||||| |||||||||||||||||    
T  1007 accttgattgtgtcatagccttctat 1032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University