View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_high_3 (Length: 613)
Name: NF10049A_high_3
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 16 - 609
Target Start/End: Complemental strand, 2943711 - 2943118
Alignment:
| Q |
16 |
acatcaacattttctgtatacacgtcagaaataagaatatattaagcttcaactttacctgcacaggaatatttggaagcttggtcggtgcttgggtaaa |
115 |
Q |
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| T |
2943711 |
acatcaacattttctgtatacatgtcagaaataacaatatattaagcttcaactttacctgcacaggaatatttggaagcttggtcggtgcttgggtaaa |
2943612 |
T |
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| Q |
116 |
ttttgaatgatcgggttgtaacctcatttggcttcatgatcaaaaattgctcctgaacagtgttcaataaaaattaaatacctaaacttgaagatcaatg |
215 |
Q |
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| T |
2943611 |
ttttgaatgatcgggttgtaatctcatttggcttcatgatcaaaaattgctcctgaacagtgttcaataaaaattaaatacctaaacttgaagatcaatg |
2943512 |
T |
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| Q |
216 |
aaactatacaactggaatggtnnnnnnncaatatgctgaagttgaccaaatggttcagcatagtacctccatcaacgtgatctctttggagcaatcaaac |
315 |
Q |
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| T |
2943511 |
aaactatacaactggaatggtaaaaaaacaatatgctgaagttgaccaaatggttcagcatagtacctccatcaacgtgatctctttggagcaatcaaac |
2943412 |
T |
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| Q |
316 |
tgcaacacaacataaccaaacttgaaacatattctaattaatattgtgtagtgaccttaattaaatataagtatctggacatgcatttgttattttcctt |
415 |
Q |
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| T |
2943411 |
tgcaacacaacataaccaaacttgaaaaatattctaattaatattgtgtagtgaccttaattaaatataagtatctggacatgcatttgttattttcctt |
2943312 |
T |
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| Q |
416 |
gccatgtgatgcagtcaattcaactcactgactagagataatctgaccaaacaaattcttatatgaactaaatgttccttcgttataattttaacaatgc |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2943311 |
gccatgtgatgcagtcaattcaactcactgactagagat-atttgaccaaacaaattcttatatgaactaaatgttccttcgttataatttttacaatgc |
2943213 |
T |
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| Q |
516 |
ccttttatatgaactgtgatcacggatcatccagttattaatcttt-nnnnnnnccagtttcctatcagatcttataagcaaagaataggaacag |
609 |
Q |
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| T |
2943212 |
ccttttatatgaactgtgatcacggatcatcctgttattaatctttaaaaaaacccagtttcctatcagatcttataagcaaagaataggaacag |
2943118 |
T |
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