View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_high_6 (Length: 445)

Name: NF10049A_high_6
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_high_6
NF10049A_high_6
[»] chr6 (15 HSPs)
chr6 (7-433)||(22509650-22510048)
chr6 (125-433)||(19803381-19803688)
chr6 (121-377)||(33775567-33775826)
chr6 (121-377)||(644099-644358)
chr6 (121-433)||(304972-305273)
chr6 (120-297)||(305538-305714)
chr6 (121-297)||(644671-644846)
chr6 (125-297)||(33776139-33776310)
chr6 (138-277)||(26276090-26276227)
chr6 (124-278)||(26275430-26275582)
chr6 (124-189)||(23950048-23950114)
chr6 (121-175)||(8208110-8208164)
chr6 (138-189)||(23949145-23949195)
chr6 (124-188)||(19693815-19693879)
chr6 (129-166)||(18616290-18616326)
[»] chr5 (16 HSPs)
chr5 (121-433)||(31229868-31230183)
chr5 (121-433)||(4275563-4275877)
chr5 (121-433)||(2601270-2601584)
chr5 (121-297)||(2600831-2601005)
chr5 (121-297)||(4276142-4276317)
chr5 (121-297)||(31229428-31229603)
chr5 (124-277)||(3341587-3341739)
chr5 (124-277)||(3358496-3358648)
chr5 (124-278)||(3342247-3342400)
chr5 (124-278)||(3359156-3359309)
chr5 (124-188)||(11376943-11377009)
chr5 (124-199)||(11377286-11377361)
chr5 (129-183)||(5233770-5233825)
chr5 (124-188)||(11378109-11378175)
chr5 (124-188)||(11378932-11378998)
chr5 (232-284)||(5233876-5233928)
[»] chr4 (20 HSPs)
chr4 (121-433)||(51539820-51540135)
chr4 (121-433)||(39232102-39232417)
chr4 (121-433)||(46513438-46513741)
chr4 (121-433)||(4206645-4206953)
chr4 (121-377)||(49603904-49604162)
chr4 (121-297)||(39232681-39232855)
chr4 (121-297)||(4206205-4206380)
chr4 (121-297)||(51540400-51540575)
chr4 (120-297)||(49603415-49603591)
chr4 (124-277)||(2519559-2519710)
chr4 (119-278)||(2520217-2520375)
chr4 (124-278)||(29380384-29380537)
chr4 (125-259)||(2528601-2528733)
chr4 (124-277)||(29379724-29379876)
chr4 (122-187)||(26355225-26355290)
chr4 (143-185)||(25699311-25699353)
chr4 (124-180)||(14090722-14090778)
chr4 (145-199)||(42020403-42020457)
chr4 (212-281)||(42020880-42020949)
chr4 (121-175)||(441304-441358)
[»] chr3 (17 HSPs)
chr3 (120-433)||(47861774-47862089)
chr3 (119-433)||(53302945-53303262)
chr3 (125-433)||(1194099-1194406)
chr3 (120-433)||(11504115-11504431)
chr3 (121-433)||(48222323-48222631)
chr3 (121-297)||(11503676-11503851)
chr3 (121-297)||(48222896-48223071)
chr3 (121-297)||(47862354-47862529)
chr3 (141-297)||(53303527-53303681)
chr3 (124-188)||(6588547-6588611)
chr3 (121-183)||(30733609-30733672)
chr3 (120-184)||(16073635-16073698)
chr3 (209-305)||(6588653-6588749)
chr3 (207-277)||(11195718-11195788)
chr3 (155-188)||(11195828-11195861)
chr3 (139-175)||(25749094-25749130)
chr3 (124-184)||(6589314-6589374)
[»] chr2 (13 HSPs)
chr2 (121-433)||(22424032-22424347)
chr2 (120-297)||(22424612-22424788)
chr2 (121-297)||(1388977-1389152)
chr2 (124-277)||(29982814-29982966)
chr2 (124-277)||(37645068-37645220)
chr2 (131-418)||(25216863-25217147)
chr2 (124-278)||(37644407-37644560)
chr2 (124-278)||(29982153-29982306)
chr2 (124-277)||(21647602-21647754)
chr2 (124-278)||(21648262-21648415)
chr2 (124-277)||(15321814-15321967)
chr2 (152-278)||(15322553-15322677)
chr2 (124-199)||(15167800-15167876)
[»] chr7 (15 HSPs)
chr7 (120-433)||(33255718-33256034)
chr7 (121-377)||(47942010-47942268)
chr7 (121-297)||(47942581-47942756)
chr7 (121-297)||(47948011-47948186)
chr7 (121-297)||(33256299-33256473)
chr7 (124-278)||(7331113-7331266)
chr7 (124-277)||(7331774-7331926)
chr7 (124-278)||(31724085-31724238)
chr7 (119-369)||(16959420-16959663)
chr7 (124-199)||(34151599-34151675)
chr7 (124-199)||(34175449-34175525)
chr7 (121-180)||(22377356-22377416)
chr7 (143-188)||(48843199-48843245)
chr7 (119-188)||(16941088-16941156)
chr7 (283-369)||(16940629-16940715)
[»] chr1 (20 HSPs)
chr1 (121-433)||(36180161-36180476)
chr1 (120-433)||(11625724-11626040)
chr1 (121-433)||(250121-250428)
chr1 (121-297)||(11625285-11625459)
chr1 (121-297)||(36179715-36179889)
chr1 (121-297)||(249681-249856)
chr1 (121-297)||(47708400-47708575)
chr1 (124-278)||(45880757-45880910)
chr1 (124-277)||(35813295-35813446)
chr1 (124-278)||(9088351-9088504)
chr1 (124-278)||(32517472-32517625)
chr1 (124-277)||(9087691-9087843)
chr1 (124-277)||(45881418-45881570)
chr1 (124-188)||(35814028-35814093)
chr1 (164-299)||(29112977-29113110)
chr1 (124-277)||(32516812-32516964)
chr1 (120-284)||(42308798-42308963)
chr1 (124-199)||(51590750-51590826)
chr1 (121-182)||(27039099-27039160)
chr1 (120-177)||(51588630-51588686)
[»] chr8 (15 HSPs)
chr8 (121-433)||(38376645-38376958)
chr8 (121-433)||(29555506-29555821)
chr8 (121-377)||(28824611-28824869)
chr8 (121-377)||(5156550-5156809)
chr8 (121-377)||(44446454-44446712)
chr8 (120-297)||(44445965-44446141)
chr8 (121-297)||(28824123-28824298)
chr8 (121-297)||(38376205-38376380)
chr8 (119-297)||(29556085-29556262)
chr8 (124-297)||(5157122-5157294)
chr8 (124-278)||(5157885-5158038)
chr8 (124-278)||(39773567-39773720)
chr8 (124-277)||(39774228-39774380)
chr8 (200-277)||(5157311-5157388)
chr8 (124-199)||(14857925-14858001)
[»] scaffold0181 (2 HSPs)
scaffold0181 (126-277)||(17972-18122)
scaffold0181 (124-278)||(17311-17464)
[»] scaffold0178 (3 HSPs)
scaffold0178 (120-188)||(4748-4816)
scaffold0178 (214-281)||(5030-5097)
scaffold0178 (124-188)||(5144-5209)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 433
Target Start/End: Original strand, 22509650 - 22510048
Alignment:
Q  7 taatcatggttattcagaaagagagaatggtcgcgatacacgcacttcaccgcgttagggttgtatcgcgttttatattttggatctttaatatatatgc 106  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22509650 taatcatggttattcagaaagagagaatggccgcgatacacgcacttcaccgcgttagggttgtatcgcgttttatattttggatctttaatatatatgc 22509749  T
Q  107 atcttgtaaggtaggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttac 206  Q
    ||          ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  22509750 at----------aggaagattgctttttaggcccc-caatatctctttagaccccctaaaaatacaaaaataacgtttataatacatccggtatagttac 22509838  T
Q  207 ataccggtagtgcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagtta 306  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||        ||||||||||||||||||| ||||||||||||    
T  22509839 ataccggtagtgcatttt-aattttcacattttaaaccttcggtatgtacatgccggagg--------caaattttcacgtttatcgtattcggtagtta 22509929  T
Q  307 tgttttggaggaacattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagtttttt 406  Q
    |||| |||||||| ||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22509930 tgttctggaggaatattttgcgatttctcaattacacctc--------atataccgtactccacccacgttattatctatataaaatggtgcagtttttt 22510021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 125 - 433
Target Start/End: Original strand, 19803381 - 19803688
Alignment:
Q  125 attgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattt 223  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | || |||  ||||||||||||||||||||||    
T  19803381 attgctttttaggccccctcaatatctctttaggccccctgaaaatacaaaaataacctttataatacaccccgta--gttacataccggtagtgcattt 19803478  T
Q  224 taaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaacatt 323  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||| |||||||    
T  19803479 taaattttcatattttaaaccttcggtatgtacataccggaggcacatttacaaattttcacgtttttcgcattcggcagttatgttttggacgaacatt 19803578  T
Q  324 ttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattattttataag 423  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||||||||||||||||||| ||||||| ||||    
T  19803579 ttgcgatttcttaattacacctccggtatatatataccgtactccacccacgttgttatttgtataaaatggtgcagttttttaacagttattttctaag 19803678  T
Q  424 cttcaatatt 433  Q
    ||||||||||    
T  19803679 cttcaatatt 19803688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 121 - 377
Target Start/End: Original strand, 33775567 - 33775826
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  33775567 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 33775664  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||    
T  33775665 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggtggaa 33775764  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgtt 377  Q
        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33775765 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgtt 33775826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 121 - 377
Target Start/End: Original strand, 644099 - 644358
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||||||||| ||||||    
T  644099 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacattcggta--gttacataccgatagtgc 644196  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  644197 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 644296  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgtt 377  Q
        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  644297 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgtt 644358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 121 - 433
Target Start/End: Original strand, 304972 - 305273
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||                ||||||    
T  304972 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccgg----------------tagtgc 305055  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||    
T  305056 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctgaaggaa 305155  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||    
T  305156 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttat 305255  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  305256 tttctaagcttcaatatt 305273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 120 - 297
Target Start/End: Complemental strand, 305714 - 305538
Alignment:
Q  120 ggaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  305714 ggaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtg 305617  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  305616 cattttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 305538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 644846 - 644671
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  644846 gaagattgctttttagacccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 644749  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  644748 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 644671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 33776310 - 33776139
Alignment:
Q  125 attgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattt 223  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  33776310 attgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgcattt 33776213  T
Q  224 taaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  33776212 taaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 33776139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 26276227 - 26276090
Alignment:
Q  138 ccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattttaaattttcacatt 237  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  26276227 ccccccaatatctctttaggtcccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgcattttaaattttcacatt 26276130  T
Q  238 ttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  26276129 ttaaaccttcggtatgtacataccggaggcacattttcaa 26276090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 124 - 278
Target Start/End: Original strand, 26275430 - 26275582
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |  |||||  ||| || ||||| ||||| ||||    
T  26275430 gattgctttttaggccccctcaatatctctttaggccctctaaaaatacaaaaataacctttataagacttccgg--tagataaatacc-gtagttcatt 26275526  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  26275527 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 26275582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 23950114 - 23950048
Alignment:
Q  124 gattgctttttaggcccc-ccaatatctctttaggccccctaaaaatacaaaaataacctttataat 189  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  23950114 gattgctttttaggctcctccaatatctctttaggccccctaaaaatacaaaattaacctttataat 23950048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 8208110 - 8208164
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaa 175  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||| |||||    
T  8208110 gaagattgctttttaggccccccagtttctctttaggctccctaaaaatccaaaa 8208164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 23949145 - 23949195
Alignment:
Q  138 ccccccaatatctctttaggccccctaaaaatacaaaaataacctttataat 189  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  23949145 ccccccaatatctctttag-ccccttaaaaatacaaaattaacctttataat 23949195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 19693815 - 19693879
Alignment:
Q  124 gattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataa 188  Q
    |||||||||||||  |||| |||||||||||||||| || |||||||| |||| || ||||||||    
T  19693815 gattgctttttagttccccaaatatctctttaggccaccaaaaaatacgaaaacaatctttataa 19693879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 18616290 - 18616326
Alignment:
Q  129 ctttttaggccccccaatatctctttaggccccctaaa 166  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18616290 ctttttaggcccccca-tatctctttaggccccctaaa 18616326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 121 - 433
Target Start/End: Complemental strand, 31230183 - 31229868
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  31230183 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 31230086  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  31230085 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 31229986  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||| | ||||    
T  31229985 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgaataaaatggtgcagttttttaagagttat 31229886  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  31229885 tttctaagcttcaatatt 31229868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 121 - 433
Target Start/End: Original strand, 4275563 - 4275877
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4275563 gaagattgctttttaggcccccctaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 4275660  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  4275661 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcatttggtagttatgttctggaggaa 4275760  T
Q  320 cat---tttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattatt 416  Q
    |||   |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||    
T  4275761 cattcatttgcgatttctcaattatacctccggtatatatataccgtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttatt 4275860  T
Q  417 ttataagcttcaatatt 433  Q
    || ||||||||||||||    
T  4275861 ttctaagcttcaatatt 4275877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 121 - 433
Target Start/End: Complemental strand, 2601584 - 2601270
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||    
T  2601584 gaagattgctttttaggccccccaatatctctttaggcctcctaaaaatacaaaaataacctttataatacatctggta--gttacataccggtagtgca 2601487  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa- 319  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||     
T  2601486 ttttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgcttatcgcattcggtagttatgttctggaggaac 2601387  T
Q  320 ---cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattatt 416  Q
       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||| | |||||    
T  2601386 attcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtataaaatggtgtagttttttaagagttatt 2601287  T
Q  417 ttataagcttcaatatt 433  Q
    || ||||||||||||||    
T  2601286 ttctaagcttcaatatt 2601270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 2600831 - 2601005
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  2600831 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccgg--tagttacataccggtagtgca 2600928  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  2600929 ttttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 2601005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 4276317 - 4276142
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4276317 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 4276220  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  4276219 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcgcgtttatcgcatt 4276142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 31229428 - 31229603
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  31229428 gaagattgctttttaggcccccccaatatctctttaggccccctaaaagtacaaaaataacctttataatacatccggta--gttacataccggtagtgc 31229525  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  31229526 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 31229603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 3341587 - 3341739
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| ||||    
T  3341587 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcatt 3341684  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  3341685 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 3341739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 3358496 - 3358648
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| ||||    
T  3358496 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcatt 3358593  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  3358594 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 3358648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 3342400 - 3342247
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| ||||    
T  3342400 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcatt 3342303  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  3342302 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 3342247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 3359309 - 3359156
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| ||||    
T  3359309 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcatt 3359212  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  3359211 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 3359156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 11376943 - 11377009
Alignment:
Q  124 gattgctttttaggccccccaatatctctttag-gccccctaaaaatac-aaaaataacctttataa 188  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||||||||    
T  11376943 gattgctttttaggccccccaatatctctttggtcccccctaaaaatacaaaaaataacctttataa 11377009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 11377286 - 11377361
Alignment:
Q  124 gattgctttttaggccccccaatatctctttaggccccctaaaaatac-aaaaataacctttataatatatccggta 199  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||| ||||||||| ||||||| | ||||||||    
T  11377286 gattgctttttaggcccc-caatatctctttggtccccctaaaaatacaaaaaataacttttataagacatccggta 11377361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 5233770 - 5233825
Alignment:
Q  129 ctttttaggcccc-ccaatatctctttaggccccctaaaaatacaaaaataacctt 183  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  5233770 ctttttaggcccctccaatatctttttaggccctctaaaaatacaaaaataacctt 5233825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 11378109 - 11378175
Alignment:
Q  124 gattgctttttaggccccccaatatctctttaggccccc-taaaaatac-aaaaataacctttataa 188  Q
    |||||| ||||| |||||||||||||||||| | ||||| ||||||||| |||||||||||||||||    
T  11378109 gattgcattttaagccccccaatatctctttggtcccccttaaaaatacgaaaaataacctttataa 11378175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 11378932 - 11378998
Alignment:
Q  124 gattgctttttaggccccccaatatctctttag-gccccctaaaaatac-aaaaataacctttataa 188  Q
    |||||| ||||| |||||||||||||||||| |  |||||||||||||| |||||||||||||||||    
T  11378932 gattgcattttaagccccccaatatctctttggccccccctaaaaatacgaaaaataacctttataa 11378998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 5233876 - 5233928
Alignment:
Q  232 cacattttaaacctttggtatgtacataccggaggcaaattttcaaattttca 284  Q
    ||||||||  ||||| ||||||||||||||||||||| ||||||| |||||||    
T  5233876 cacattttgcaccttcggtatgtacataccggaggcatattttcacattttca 5233928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 121 - 433
Target Start/End: Original strand, 51539820 - 51540135
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  51539820 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 51539917  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  51539918 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 51540017  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||| | ||||    
T  51540018 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgaataaaatggtgcagttttttaagagttat 51540117  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  51540118 tttctaagcttcaatatt 51540135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 121 - 433
Target Start/End: Original strand, 39232102 - 39232417
Alignment:
Q  121 gaagattgctttttaggcccc-ccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  39232102 gaagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 39232199  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  39232200 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 39232299  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||||| | ||||    
T  39232300 cattcattttgcgatttctcaattacacatccggtatatatataccgtactccacccacgttgttatctgtttaaaatggtgcagttttttaagagttat 39232399  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  39232400 tttctaagcttcaatatt 39232417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 121 - 433
Target Start/End: Complemental strand, 46513741 - 46513438
Alignment:
Q  121 gaagattgctttttaggccccccaa-tatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||  ||||||||||||||||||    
T  46513741 gaagtttgctttttaggccccccaaatatctctttaggccccctaaaaatacaaaaataatctttataatacatccggta--gttacataccggtagtgc 46513644  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||        |||||||||||||| ||||||||||| ||||||||    
T  46513643 attttaaattttcacattttaaaccttcggtatgtgcataccggaggcaaattttca--------cgtttatcgcattcagtagttatgttatggaggaa 46513552  T
Q  320 cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattatttta 419  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  46513551 cattttgcgatttctcaattacacctctggtatatacataccgtactcaacccacgttgttatctatataaaatggtgcaattttttaacatttatttta 46513452  T
Q  420 taagcttcaatatt 433  Q
    ||||||||||||||    
T  46513451 taagcttcaatatt 46513438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 121 - 433
Target Start/End: Complemental strand, 4206953 - 4206645
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||    
T  4206953 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacatacaggtagtgc 4206856  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||       ||||||||||| ||||||||    
T  4206855 attttaaattttcacattttacaccttcggtatgtacataccggaggcatatttacaaattttcacgtttatc-------gtagttatgttctggaggaa 4206763  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||    
T  4206762 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttat 4206663  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  4206662 tttctaagcttcaatatt 4206645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 121 - 377
Target Start/End: Complemental strand, 49604162 - 49603904
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||    
T  49604162 gaagattgcttttcaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataa-acatccggta--gttacataccggtagtgc 49604066  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  49604065 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 49603966  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgtt 377  Q
        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49603965 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgtt 49603904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 39232855 - 39232681
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||||||||    
T  39232855 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataatctttataatacatccggta--gttacataccggtagtgca 39232758  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  39232757 ttttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 39232681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 4206205 - 4206380
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4206205 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 4206302  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| | |||||||||||    
T  4206303 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcgcttttatcgcatt 4206380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 51540575 - 51540400
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  51540575 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 51540478  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  51540477 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 51540400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 120 - 297
Target Start/End: Original strand, 49603415 - 49603591
Alignment:
Q  120 ggaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  49603415 ggaagattgctttttaggcccccccaatatctctttaagccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtg 49603512  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  49603513 cattttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 49603591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 2519559 - 2519710
Alignment:
Q  124 gattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattt 223  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  2519559 gattgctttttaggccctccaatatctctttaggccccttaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgcattt 2519656  T
Q  224 taaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  2519657 taaattttcacattttaaaccttcggtatgtacataccggaggcacattttcaa 2519710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 119 - 278
Target Start/End: Complemental strand, 2520375 - 2520217
Alignment:
Q  119 aggaagattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagt 217  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||| || |||||||||||    
T  2520375 aggaggattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttataagacttccgg--tagataaataccggtagt 2520278  T
Q  218 gcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
     |||||||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  2520277 tcattttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 2520217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 29380537 - 29380384
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  29380537 gattgctttttaggccccctcaatatctctttaggtcccctaaaaatacaaaaataacctttataagacttccgg--tagataaataccggtagttcatt 29380440  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  29380439 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 29380384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 125 - 259
Target Start/End: Complemental strand, 2528733 - 2528601
Alignment:
Q  125 attgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatttt 224  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| | |||||| ||||| |||||| |||||||||  || |||||||| |||||||||    
T  2528733 attgctttttaggccccctaatatctctttaggtcccctaaaaattcgaaaatagcctttctaatatgtccggtata--taaataccggtggtgcatttt 2528636  T
Q  225 aaattttcacattttaaacctttggtatgtacata 259  Q
    |||||||||||||| |||||||  | |||||||||    
T  2528635 aaattttcacatttaaaaccttccggatgtacata 2528601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 29379724 - 29379876
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  || ||  ||| || |||||||| || ||||    
T  29379724 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacaacttctgg--tagataaataccggtcgttcatt 29379821  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  29379822 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 29379876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 26355225 - 26355290
Alignment:
Q  122 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 187  Q
    |||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |||| ||||||    
T  26355225 aagattgctttttaggcctcccaatatctgtttaggccccctaataatacaaaattaacttttata 26355290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 25699311 - 25699353
Alignment:
Q  143 caatatctctttaggccccctaaaaatacaaaaataaccttta 185  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  25699311 caatatctctttaggccccctaaaaatacgaaaataaccttta 25699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 14090722 - 14090778
Alignment:
Q  124 gattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataac 180  Q
    |||||||||||||| | |||||||||| ||||||||||| |||||||| ||||||||    
T  14090722 gattgctttttaggtctcccaatatctatttaggcccccaaaaaatacgaaaataac 14090778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 42020403 - 42020457
Alignment:
Q  145 atatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta 199  Q
    |||||| |||||||||||||||||||| ||||||| |||||||| || |||||||    
T  42020403 atatctatttaggccccctaaaaatacgaaaataatctttataaaatgtccggta 42020457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 42020949 - 42020880
Alignment:
Q  212 ggtagtgcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattt 281  Q
    |||||| || ||||| ||||||||||||  |||| |||||||||||||||| ||||| || |||||||||    
T  42020949 ggtagttcaatttaacttttcacattttgcacctctggtatgtacataccgaaggcacatattcaaattt 42020880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 441304 - 441358
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaa 175  Q
    ||||||| ||||||||  ||||  ||||||||||||||||||||||| |||||||    
T  441304 gaagatttctttttagagcccctcatatctctttaggccccctaaaattacaaaa 441358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 120 - 433
Target Start/End: Original strand, 47861774 - 47862089
Alignment:
Q  120 ggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||  ||||    
T  47861774 ggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggatgtgc 47861871  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  47861872 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 47861971  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||| | ||||    
T  47861972 cattcattttgcgatttctcaattacacctccggtatatatatacggtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttat 47862071  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  47862072 tttctaagcttcaatatt 47862089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 119 - 433
Target Start/End: Original strand, 53302945 - 53303262
Alignment:
Q  119 aggaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagt 217  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  53302945 aggaatattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagt 53303042  T
Q  218 gcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggagg 317  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||| ||||||| ||||||    
T  53303043 gcattttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcgcgtttatcacattcggtacttatgttctggagg 53303142  T
Q  318 aa----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaatt 413  Q
    ||    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||| | ||    
T  53303143 aacattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtatataatggtgcagttttttaagagtt 53303242  T
Q  414 attttataagcttcaatatt 433  Q
    ||||| ||||||||||||||    
T  53303243 attttctaagcttcaatatt 53303262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 125 - 433
Target Start/End: Original strand, 1194099 - 1194406
Alignment:
Q  125 attgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||  ||||||||||||||||||||||    
T  1194099 attgctttttaggccccctcaatatctctttaggccccccaaaaatacaaaaataacctttataatacacccggta--gttacataccggtagtgcattt 1194196  T
Q  224 taaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaacatt 323  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||| |||||||||| ||||||||| |||| |||||||    
T  1194197 taaattttcatattttaaaccttcggtatgtacataccggaggcacatttacaaatttccacgtttttcgcattcggcagttatgttctggacgaacatt 1194296  T
Q  324 ttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattattttataag 423  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||| | ||||||||||||||||||||||||| ||||||| ||||    
T  1194297 ttgcgatttcttaattacacctccggtatatatataccgtactccacccatgttgttatttgtataaaatggtgcagttttttaacagttattttctaag 1194396  T
Q  424 cttcaatatt 433  Q
    ||||||||||    
T  1194397 cttcaatatt 1194406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 120 - 433
Target Start/End: Complemental strand, 11504431 - 11504115
Alignment:
Q  120 ggaagattgctttttaggc-cccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||| ||||  |||    
T  11504431 ggaagattgctttttaggctcccccaatatctttttaggccccttaaaaatacaaaaataacctttataatacatccggta--gttacatcccggatgtg 11504334  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggagga 318  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  11504333 cattttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggagga 11504234  T
Q  319 a----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaatta 414  Q
    |    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||||| | |||    
T  11504233 acattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtttaaaatggtgcagttttttaagagtta 11504134  T
Q  415 ttttataagcttcaatatt 433  Q
    |||| ||||||||||||||    
T  11504133 ttttctaagcttcaatatt 11504115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 121 - 433
Target Start/End: Original strand, 48222323 - 48222631
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||    
T  48222323 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacatacaggtagtgc 48222420  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||       ||||||||||| ||||||||    
T  48222421 attttaaattttcacattttacaccttcggtatgtacataccggaggcatatttacaaattttcacgtttatc-------gtagttatgttctggaggaa 48222513  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||    
T  48222514 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttat 48222613  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  48222614 tttctaagcttcaatatt 48222631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 11503676 - 11503851
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  11503676 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 11503773  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  11503774 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcatt 11503851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 48223071 - 48222896
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  48223071 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 48222974  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| | |||||||||||    
T  48222973 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcgcttttatcgcatt 48222896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 47862529 - 47862354
Alignment:
Q  121 gaagattgctttttaggcccc-ccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  47862529 gaagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 47862432  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||  |||||||||||||    
T  47862431 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaatttttgcgtttatcgcatt 47862354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 53303681 - 53303527
Alignment:
Q  141 cccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattttaaattttcacatttta 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  53303681 cccaatatctctttaggccccctaaaaatacaaaaataacctttataacacatccggta--gttacataccggtagtgcattttaaattttcacatttta 53303584  T
Q  241 aacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
     ||||| |||||||||||||| | |||| |||| ||||||||| | |||||||||||    
T  53303583 caccttcggtatgtacataccaggggcacatttacaaattttcgcatttatcgcatt 53303527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 6588547 - 6588611
Alignment:
Q  124 gattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataa 188  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6588547 gattgctttttagccccctcaatatctctttaggccccctaaaaatacaaaaataacctttataa 6588611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 30733609 - 30733672
Alignment:
Q  121 gaagattgctttttaggcccc-ccaatatctctttaggccccctaaaaatacaaaaataacctt 183  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  30733609 gaagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaattaacctt 30733672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 16073635 - 16073698
Alignment:
Q  120 ggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataaccttt 184  Q
    |||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||| ||||||||    
T  16073635 ggaagattgctttt-aggcccccaaatatctctttgggccccccaaaaatacaaaattaaccttt 16073698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 6588653 - 6588749
Alignment:
Q  209 accggtagtgcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagtt 305  Q
    ||||||||| |||||||| ||||||||||||  ||||   |||||||||||||| || || |||||||||||| ||| |||| | ||| ||||||||    
T  6588653 accggtagttcattttaatttttcacattttgcacctcgagtatgtacataccgaagacacattttcaaatttgcacatttagcacatacggtagtt 6588749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 11195788 - 11195718
Alignment:
Q  207 ataccggtagtgcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| |||||| |||||| | |||||||||||| |||||| | |||||||||||| |||||| ||||||||    
T  11195788 atactggtagttcatttttatttttcacattttgaaccttcgatatgtacataccagaggcacattttcaa 11195718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 11195861 - 11195828
Alignment:
Q  155 aggccccctaaaaatacaaaaataacctttataa 188  Q
    ||||||||||||||||||||||||||||||||||    
T  11195861 aggccccctaaaaatacaaaaataacctttataa 11195828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 25749130 - 25749094
Alignment:
Q  139 cccccaatatctctttaggccccctaaaaatacaaaa 175  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25749130 cccccaatatctttttaggccccctaaaaatacaaaa 25749094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 6589374 - 6589314
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataaccttt 184  Q
    |||||| |||||||||||| | ||||||||||||||||| | ||||||| ||||||||||||    
T  6589374 gattgccttttaggccccctcgatatctctttaggccccgt-aaaatacgaaaataaccttt 6589314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 121 - 433
Target Start/End: Original strand, 22424032 - 22424347
Alignment:
Q  121 gaagattgctttttaggc-cccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  22424032 gaagattgctttttaggctcccccaatatctctttaggccccttaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 22424129  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  22424130 attttaaattttcatattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 22424229  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||    
T  22424230 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctatataaaatggtgcagttttttaagagttat 22424329  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  22424330 tttctaagcttcaatatt 22424347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 120 - 297
Target Start/End: Complemental strand, 22424788 - 22424612
Alignment:
Q  120 ggaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  22424788 ggaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtg 22424691  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  22424690 cattttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcgcgtttatcgcatt 22424612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 1389152 - 1388977
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  1389152 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 1389055  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| | |||||||||||    
T  1389054 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcgcttttatcgcatt 1388977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 29982966 - 29982814
Alignment:
Q  124 gattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  29982966 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta--gttacataccggtagtgcatt 29982869  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  29982868 ttaaattttcacattttaaaccttcggtatgtacataccggaggcacattttcaa 29982814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 37645220 - 37645068
Alignment:
Q  124 gattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  37645220 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttagaatatatccggta--gttacataccggtagtgcatt 37645123  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  37645122 ttaaattttcacattttaaaccttcggtatgtacataccggaggcacattttcaa 37645068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 131 - 418
Target Start/End: Complemental strand, 25217147 - 25216863
Alignment:
Q  131 ttttaggccccccaa-tatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattttaaatt 229  Q
    ||||||||||||||| ||||||||||| |||| ||||||||  |||||| |||||||||||  || ||||  |||| |||||||| |||||||||||| |    
T  25217147 ttttaggccccccaaatatctctttagaccccttaaaaatatgaaaatatcctttataatacgtcaggta--gttaaataccggtggtgcattttaaaat 25217050  T
Q  230 ttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaacattttgcga 329  Q
    |||||||||| |||||| |||||||||||||||| |||| ||||  || ||||||  |||| | |||||||||||||||||  |||||||||||||| ||    
T  25217049 ttcacattttgaaccttcggtatgtacataccgggggcacatttataatttttcagatttagcacattcggtagttatgttccggaggaacattttgaga 25216950  T
Q  330 tttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattatttt 418  Q
    |||||   |||| ||| |||||||||||||||||||||||||||| || |||  |||||||||  |||||| |||||| || |||||||    
T  25216949 tttctattttacgcctacggtatatacataccgtactccacccacattgtta--tatataaaagagtgcagctttttagcagttatttt 25216863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 124 - 278
Target Start/End: Original strand, 37644407 - 37644560
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  37644407 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttataagacttccgg--tagataaataccggtagttcatt 37644504  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  37644505 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 37644560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 124 - 278
Target Start/End: Original strand, 29982153 - 29982306
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  29982153 gattgctttttaggccctctcaatatctctttaggccccctaaaaatacaaaaataacctttataagacttccgg--tagataaataccggtagttcatt 29982250  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  29982251 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 29982306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 21647602 - 21647754
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| ||||    
T  21647602 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcatt 21647699  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  21647700 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 21647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 21648415 - 21648262
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| ||||    
T  21648415 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcatt 21648318  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  21648317 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 21648262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 15321814 - 15321967
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaat-acaaaaataacctttataatatatccggtatagttacataccggtagtgcat 221  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||  |  |||||  ||| || ||||||||||| | |    
T  15321814 gattgctttttaagccccctcaatatctctttaggccccctaaaaataacaaaaataacctttatacgacttccgg--tagataaataccggtagttcgt 15321911  T
Q  222 tttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    ||||| ||||| ||||||  ||||  ||||| ||||||||| ||||| ||||||||    
T  15321912 tttaatttttctcattttgcacctccggtatatacataccgaaggcacattttcaa 15321967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 152 - 278
Target Start/End: Complemental strand, 15322677 - 15322553
Alignment:
Q  152 tttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattttaaattttcacattttaaacctttggta 251  Q
    |||||||||||||||||||||||||| |||||||||| |  ||||||| |  || ||||||||||| |||||||| ||||| ||||||  ||||  ||||    
T  15322677 tttaggccccctaaaaatacaaaaatgacctttataagacttccggtaga--taaataccggtagttcattttaacttttctcattttgcacctccggta 15322580  T
Q  252 tgtacataccggaggcaaattttcaaa 278  Q
    ||||||||||| ||||| |||||||||    
T  15322579 tgtacataccgaaggcacattttcaaa 15322553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 15167876 - 15167800
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta 199  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||  |||| |||||| ||| ||||    
T  15167876 gattgctttttagaccccctcaatatctctttaggccccctaaagatacaaaaatgcccttaataatacatctggta 15167800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 120 - 433
Target Start/End: Original strand, 33255718 - 33256034
Alignment:
Q  120 ggaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  33255718 ggaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtg 33255815  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggagga 318  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  33255816 cattttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacatttatcgcattcggtagttatgttctggagga 33255915  T
Q  319 a----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaatta 414  Q
    |    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||| | |||    
T  33255916 acattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgaataaaatggtgcagttttttaagagtta 33256015  T
Q  415 ttttataagcttcaatatt 433  Q
    |||| ||||||||||||||    
T  33256016 ttttctaagcttcaatatt 33256034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 121 - 377
Target Start/End: Original strand, 47942010 - 47942268
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||  |||||    
T  47942010 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggatgtgca 47942107  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa- 319  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||     
T  47942108 ttttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaac 47942207  T
Q  320 ---cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgtt 377  Q
       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47942208 attcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgtt 47942268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 47942756 - 47942581
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  47942756 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta--gttacataccggtagtgc 47942659  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  47942658 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 47942581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 47948186 - 47948011
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  47948186 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta--gttacataccggtagtgc 47948089  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  47948088 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 47948011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 33256473 - 33256299
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  33256473 gaagattgctttttaggccccccaatatctctttaggccccctaaaagtacaaaaataacctttataatacatccggta--gttacataccggtagtgca 33256376  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  33256375 ttttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 33256299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 124 - 278
Target Start/End: Original strand, 7331113 - 7331266
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  7331113 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttataagacttccgg--tagataaataccggtagttcatt 7331210  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  7331211 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 7331266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 7331926 - 7331774
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  ||| |  ||| || ||||||||||| ||||    
T  7331926 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccag--tagataaataccggtagttcatt 7331829  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  7331828 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 7331774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 31724238 - 31724085
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |  ||||||| |  || ||||||||||| ||||    
T  31724238 gattgctttttaggccccctcaatatctatttaggccccttaaaaatacaaaaataatctttataagacttccggtaga--taaataccggtagttcatt 31724141  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| |||||||  |||  ||||||||||||||| ||||| |||||||||    
T  31724140 ttaacttttctcattttacccctccggtatgtacataccgaaggcacattttcaaa 31724085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 119 - 369
Target Start/End: Complemental strand, 16959663 - 16959420
Alignment:
Q  119 aggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    |||| |||||||||||| |||||| ||||||||||||||| |||||||||||  |||||||| ||||||| |    ||  |||  || ||||||||||      
T  16959663 aggaggattgctttttacgccccc-aatatctctttaggctccctaaaaatatgaaaataacttttataaga----cg--atacgtaaataccggtagat 16959571  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggagga 318  Q
    |||||||  ||||||||||||  ||||| ||| ||||||||||||  ||| ||||||| |||| ||| |||| | ||| |||||||||   || ||||||    
T  16959570 cattttattttttcacattttgcaccttcggtctgtacataccggctgcacattttcacatttgcacatttagcacatacggtagttacagttcggagga 16959471  T
Q  319 acattttgcgatttctcaattacacctccggtatatacataccgtactcca 369  Q
    ||||||||  |||| |   ||||||||||||||||| |||||| |||||||    
T  16959470 acattttgaaatttatattttacacctccggtatattcataccatactcca 16959420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 34151599 - 34151675
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  |||| |||||| ||||||||    
T  34151599 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaaatgcccttaataatacatccggta 34151675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 34175525 - 34175449
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  |||| |||||| ||||||||    
T  34175525 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaaatgcccttaataatacatccggta 34175449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 22377416 - 22377356
Alignment:
Q  121 gaagattgctttttaggcccc-ccaatatctctttaggccccctaaaaatacaaaaataac 180  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  22377416 gaagattgctttttaggcccctccagtatctctttaggccccctaaaaatacaaaattaac 22377356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 48843199 - 48843245
Alignment:
Q  143 caatatctctttaggccccctaaaaatac-aaaaataacctttataa 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  48843199 caatatctctttaggccccctaaaaatacgaaaaataacctttataa 48843245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 16941156 - 16941088
Alignment:
Q  119 aggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataa 188  Q
    |||| |||||||||||| |||||| | ||||||||||||| |||||||||||  |||||||| |||||||    
T  16941156 aggaggattgctttttacgccccc-agtatctctttaggctccctaaaaatatgaaaataacttttataa 16941088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 369
Target Start/End: Complemental strand, 16940715 - 16940629
Alignment:
Q  283 cacgtttatcgcattcggtagttatgttttggaggaacattttgcgatttctcaattacacctccggtatatacataccgtactcca 369  Q
    |||||||| | ||| |||||||||   || ||||||||||||||  ||||||   ||||||||| |||||||||||||| |||||||    
T  16940715 cacgtttagcacatacggtagttacagttcggaggaacattttgaaatttctattttacacctctggtatatacataccatactcca 16940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 121 - 433
Target Start/End: Complemental strand, 36180476 - 36180161
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  36180476 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 36180379  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  36180378 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttatggaggaa 36180279  T
Q  320 catt----ttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
    ||||    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||| | ||||    
T  36180278 cattcatattgcgatttctcaattacacctccggtatatatatacagtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttat 36180179  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||| ||||||    
T  36180178 tttctaagctttaatatt 36180161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 120 - 433
Target Start/End: Complemental strand, 11626040 - 11625724
Alignment:
Q  120 ggaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||||||    
T  11626040 ggaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataatctttataatacatccggta--gttacataccggtagtg 11625943  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggagga 318  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  11625942 cattttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggagga 11625843  T
Q  319 a----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaatta 414  Q
    |    |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||| ||||||| | |||    
T  11625842 acattcattttgcaatttctcaattacaccttcggtatatatataccgtactccacccacgttgttatctgtataaaacggtgcaggtttttaagagtta 11625743  T
Q  415 ttttataagcttcaatatt 433  Q
    |||| ||||||||||||||    
T  11625742 ttttctaagcttcaatatt 11625724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 121 - 433
Target Start/End: Complemental strand, 250428 - 250121
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||    
T  250428 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccgg--tagttacatacaggtagtgca 250331  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa- 319  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||| ||||||||||||||||||       ||||||||||| ||||||||     
T  250330 ttttaaattttcacattttacaccttcgatatgtacataccggaggcatatttacaaattttcacgtttatc-------gtagttatgttctggaggaac 250238  T
Q  320 ---cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattatt 416  Q
       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||    
T  250237 attcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttatt 250138  T
Q  417 ttataagcttcaatatt 433  Q
    || ||||||||||||||    
T  250137 ttctaagcttcaatatt 250121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 11625285 - 11625459
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||  |||||||||||||||||||    
T  11625285 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacatttataatacatccggta--gttacataccggtagtgca 11625382  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  11625383 ttttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 11625459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 36179715 - 36179889
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  36179715 gaagattgctttttaggtcccccaatatctctttaggcctcctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgca 36179812  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||| |||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  36179813 ttttaaattttcaaattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 36179889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 249681 - 249856
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||||||    
T  249681 gaagattgctttttaggcccccccaatatctctttagaccccctaaaaatacaaaaataacctttataatacatccggta--gttacatatcggtagtgc 249778  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||| | |||||||||||    
T  249779 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcgcttttatcgcatt 249856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 47708575 - 47708400
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||    
T  47708575 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacatactggtagtgc 47708478  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||| ||| |||||||||||||    
T  47708477 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaatattcgcgtttatcgcatt 47708400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 124 - 278
Target Start/End: Original strand, 45880757 - 45880910
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  45880757 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttataagacttccgg--tagataaataccggtagttcatt 45880854  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  45880855 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 45880910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 35813295 - 35813446
Alignment:
Q  124 gattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattt 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| |||||    
T  35813295 gattgctttttaggcccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcattt 35813392  T
Q  224 taaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    ||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  35813393 taatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 35813446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 9088504 - 9088351
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  |||||  ||| || ||||||||||| ||||    
T  9088504 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccggtagttcatt 9088407  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  9088406 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 9088351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 32517625 - 32517472
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  32517625 gattgctttttagaacccctcaatatctctttaggccccctaaaaatacaaaaataacctttataagacttccgg--tagataaataccggtagttcatt 32517528  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  32517527 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 32517472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 9087691 - 9087843
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  |  |||||  ||| || ||||||||||| ||||    
T  9087691 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttttacgacttccgg--tagataaataccggtagttcatt 9087788  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  9087789 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 9087843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 45881570 - 45881418
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  ||| |  ||| || ||||||||||| ||||    
T  45881570 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccag--tagataaataccggtagttcatt 45881473  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  45881472 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 45881418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 35814093 - 35814028
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataa 188  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35814093 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttataa 35814028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 29113110 - 29112977
Alignment:
Q  164 aaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcattttaaattttcacattttaaacctttggtatgtacataccgg 263  Q
    |||| |||||||||||||||||||||| ||||| ||||  || ||||| |||||||||||||||||| |||||||| ||||||   | |||||||| |||    
T  29113110 aaaattacaaaaataacctttataatacatccgatata--taaatacccgtagtgcattttaaatttacacattttgaaccttcaatgtgtacatatcgg 29113013  T
Q  264 aggcaaattttcaaattttcacgtttatcgcattcg 299  Q
    |||||  ||||||||||||||| |||| | ||||||    
T  29113012 aggcactttttcaaattttcacatttagcacattcg 29112977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 32516812 - 32516964
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||  |  ||| |  ||| || ||| ||||||| ||||    
T  32516812 gattgctttttaggccccctcaatatctctttaagtcccctaaaaatacaaaaataacctttatacgacttccag--tagataaatatcggtagttcatt 32516909  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||  ||||| ||||||||    
T  32516910 ttaatttttctcattttgcacctccggtatgtacataccaaaggcacattttcaa 32516964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 284
Target Start/End: Complemental strand, 42308963 - 42308798
Alignment:
Q  120 ggaagattgctttttaggcccc-ccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    ||||| || ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| | || | || | |  ||| |||| ||||||||||    
T  42308963 ggaaggttactttttaggcccctccaatatctttttaggcctcctaaaaatacaaaaataaccttcacaacacattcag--tagatacaaaccggtagtg 42308866  T
Q  219 c--attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttca 284  Q
    |  |||||   | | ||||||||  ||||| ||||||||||||||||||||| ||||||| |||||||    
T  42308865 catattttttctctccacattttgcaccttcggtatgtacataccggaggcatattttcacattttca 42308798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 51590826 - 51590750
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta 199  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||| |||| |||||| ||||||||    
T  51590826 gattgctttttagacccccacaatatctctttaggcaccctaaaactacaaaaatacccttaataatacatccggta 51590750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 27039160 - 27039099
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacct 182  Q
    |||| ||||| ||||||||||||||||||| |||| ||||||||||||||| ||| ||||||    
T  27039160 gaaggttgctctttaggccccccaatatctttttaagccccctaaaaatacgaaattaacct 27039099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 51588630 - 51588686
Alignment:
Q  120 ggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaat 177  Q
    ||||||||||||||||||| | | |||||||||| ||||||||||||  |||||||||    
T  51588630 ggaagattgctttttaggctctc-aatatctcttcaggccccctaaagttacaaaaat 51588686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 121 - 433
Target Start/End: Complemental strand, 38376958 - 38376645
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||  ||||||||||||  |||||    
T  38376958 gaagattgctttttaggccccccaatatctctttaggccccctaaaa-tacaaaaataatctttataatacatccggta--gttacataccggatgtgca 38376862  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa- 319  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||     
T  38376861 ttttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaac 38376762  T
Q  320 ---cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattatt 416  Q
       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||    
T  38376761 attcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgttgttatctgtataaaatggtgcagttttttaagagttatt 38376662  T
Q  417 ttataagcttcaatatt 433  Q
    || ||||||||||||||    
T  38376661 ttctaagcttcaatatt 38376645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 121 - 433
Target Start/End: Original strand, 29555506 - 29555821
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||  ||||    
T  29555506 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacatcccggatgtgc 29555603  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||    
T  29555604 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctagaggaa 29555703  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgttattatctatataaaatggtgcagttttttaacaattat 415  Q
        |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||| | ||||    
T  29555704 cattcattttgcgatttctcaattacacatccggtatatatataccgtactccacccacgttgttatctaaatataatggtgcagttttttaagagttat 29555803  T
Q  416 tttataagcttcaatatt 433  Q
    ||| ||||||||||||||    
T  29555804 tttctaagcttcaatatt 29555821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 121 - 377
Target Start/End: Complemental strand, 28824869 - 28824611
Alignment:
Q  121 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  28824869 gaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgca 28824772  T
Q  221 ttttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa- 319  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||     
T  28824771 ttttaaattttcacattttacaccttcggtatgtacatactggaggcacatttacaaattttcacgtttatcgcattcggtaattatgttctggaggaac 28824672  T
Q  320 ---cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgtt 377  Q
       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28824671 attcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgtt 28824611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 121 - 377
Target Start/End: Original strand, 5156550 - 5156809
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  5156550 gaagatttctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 5156647  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  5156648 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 5156747  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgtt 377  Q
        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5156748 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgtt 5156809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 121 - 377
Target Start/End: Complemental strand, 44446712 - 44446454
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||    
T  44446712 gaagattgcttttcaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataa-acatccggta--gttacataccggtagtgc 44446616  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcattcggtagttatgttttggaggaa 319  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  44446615 attttaaattttcacattttacaccttcggtatgtacataccggaggcacatttacaaattttcacgtttatcgcattcggtagttatgttctggaggaa 44446516  T
Q  320 ----cattttgcgatttctcaattacacctccggtatatacataccgtactccacccacgtt 377  Q
        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44446515 cattcattttgcgatttctcaattacacctccggtatatatataccgtactccacccacgtt 44446454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 120 - 297
Target Start/End: Original strand, 44445965 - 44446141
Alignment:
Q  120 ggaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtg 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  44445965 ggaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtg 44446062  T
Q  219 cattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  44446063 cattttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 44446141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 28824123 - 28824298
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  28824123 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 28824220  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  28824221 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 28824298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 38376205 - 38376380
Alignment:
Q  121 gaagattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  38376205 gaagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgc 38376302  T
Q  220 attttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  38376303 attttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 38376380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 29556262 - 29556085
Alignment:
Q  119 aggaagattgctttttagg-ccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagt 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  29556262 aggaagattgctttttaggtccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagt 29556165  T
Q  218 gcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||| || |||| ||||||||| |||||||||||||    
T  29556164 gcattttaaattttcacattttacaccttcggtatgtacataccagagacacatttacaaattttcgcgtttatcgcatt 29556085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 5157294 - 5157122
Alignment:
Q  124 gattgctttttaggcccccc-aatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  5157294 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttataatacatccggta--gttacataccggtagtgcatt 5157197  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattttcacgtttatcgcatt 297  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  5157196 ttaaattttcacattttacaccttcggtatgtacataccagaggcacatttacaaattttcgcgtttatcgcatt 5157122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 5158038 - 5157885
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||  ||| || ||||||||||| ||||    
T  5158038 gattgctttttaggccccctcaatatctctttaggcctcctaaaaatacaaaaataacctttataagacatccgg--tagataaataccggtagttcatt 5157941  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  5157940 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 5157885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 278
Target Start/End: Original strand, 39773567 - 39773720
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  39773567 gattgctttttaggccccctcaatatctctttaggccccctaaaaattcaaaaataacctttataagacttccgg--tagataaataccggtagttcatt 39773664  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| |||| |  ||||  ||||||||||||||| ||||| |||||||||    
T  39773665 ttaacttttctcattctgcacctccggtatgtacataccgaaggcacattttcaaa 39773720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 39774380 - 39774228
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  |||||  ||| || |||||| |||| ||||    
T  39774380 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttccgg--tagataaataccgatagttcatt 39774283  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| ||||||||    
T  39774282 ttaatttttctcattttgcacctccggtatgtacataccgaaggcacattttcaa 39774228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 5157311 - 5157388
Alignment:
Q  200 tagttacataccggtagtgcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  5157311 tagttacataccggtagtgcattttaaattttcacattttacaccttcggtatgtacataccggaggcacattttcaa 5157388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 14858001 - 14857925
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggta 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  |||| |||||| ||||||||    
T  14858001 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaaatgcccttaataatacatccggta 14857925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 126 - 277
Target Start/End: Complemental strand, 18122 - 17972
Alignment:
Q  126 ttgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatttt 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |  || ||  ||| || ||||||||||| ||||||    
T  18122 ttgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatacgacttctgg--tagataaataccggtagttcatttt 18025  T
Q  225 aaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaa 277  Q
    || ||||| ||||||  ||||| ||||||||||||||| ||||| ||||||||    
T  18024 aatttttctcattttgcaccttcggtatgtacataccgaaggcacattttcaa 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 278
Target Start/End: Original strand, 17311 - 17464
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataatatatccggtatagttacataccggtagtgcatt 222  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |  |||||  ||| || ||||||||||| ||||    
T  17311 gattgctttttaggccccctcaatatttctttaggccccctaaaaatataaaaataacctttataagacttccgg--tagataaataccggtagttcatt 17408  T
Q  223 ttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaa 278  Q
    |||| ||||| ||||||  ||||  ||||||||||||||| ||||| |||||||||    
T  17409 ttaacttttctcattttgcacctccggtatgtacataccgaaggcacattttcaaa 17464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 4748 - 4816
Alignment:
Q  120 ggaagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttataa 188  Q
    |||| ||||||||| || ||||| |||||||||||||||| | | ||||||| ||||||||||||||||    
T  4748 ggaatattgcttttaagccccccaaatatctctttaggcctctttaaaatacgaaaataacctttataa 4816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 5097 - 5030
Alignment:
Q  214 tagtgcattttaaattttcacattttaaacctttggtatgtacataccggaggcaaattttcaaattt 281  Q
    |||| |||||||| ||||||||||||  ||||  ||||||||||||||| ||||| ||||||||||||    
T  5097 tagttcattttaatttttcacattttgcacctccggtatgtacataccgaaggcacattttcaaattt 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 5209 - 5144
Alignment:
Q  124 gattgctttttaggccccc-caatatctctttaggccccctaaaaatacaaaaataacctttataa 188  Q
    ||||||||||||||||||  ||||||||||||||| ||| ||||||||  |||||| |||||||||    
T  5209 gattgctttttaggccccatcaatatctctttaggacccataaaaataggaaaatatcctttataa 5144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University