View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_1 (Length: 714)

Name: NF10049A_low_1
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_1
NF10049A_low_1
[»] chr8 (2 HSPs)
chr8 (23-488)||(43802131-43802596)
chr8 (25-488)||(43812700-43813163)
[»] chr3 (1 HSPs)
chr3 (500-656)||(1109017-1109169)
[»] chr5 (1 HSPs)
chr5 (316-365)||(29944727-29944776)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 23 - 488
Target Start/End: Complemental strand, 43802596 - 43802131
Alignment:
Q  23 cgcggtagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaa 122  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43802596 cgcggtagtctaaacttttatccacgaatctctccggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaa 43802497  T
Q  123 aattattcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtc 222  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43802496 aattattcttgtttttttctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtc 43802397  T
Q  223 tccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctcttgttggagatttt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43802396 tccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgccccaaccacgttatctagctcttgttggagatttt 43802297  T
Q  323 tcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43802296 tcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctt 43802197  T
Q  423 tatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtga 488  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43802196 tatgtttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtga 43802131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 25 - 488
Target Start/End: Complemental strand, 43813163 - 43812700
Alignment:
Q  25 cggtagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaaaa 124  Q
    |||||||| ||  |||||||||| |||||||||||| |||||||||| |||||||||||||| |||  ||||||||||||||||||||| ||||||| ||    
T  43813163 cggtagtcgaagtttttatccacaaatctctctggataaaattcttcggcattattagaccatatcttagaatctcttcctattgcccacaaattcacaa 43813064  T
Q  125 ttattcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtctc 224  Q
    ||| |||||       |||||||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||| | ||| |||||||||||||||||    
T  43813063 ttactcttgtttttttctttatgaaataaccatgaactgtagcatcctctgttgactcgcgcggcacaagtggtcctgcaggatataatcttaaggtctc 43812964  T
Q  225 catgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctcttgttggagatttttc 324  Q
    ||||||||||||||| |||||||||||||||| || |||||| || || |||||||| |||  |||||| ||  |||| |||||||||||||||||||||    
T  43812963 catgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatcccaactacactatccagctcttgttggagatttttc 43812864  T
Q  325 atcactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagccttta 424  Q
    || ||||||||||||||||||||||| |||||||||||||||||||  ||||| ||||| ||||||||| |||| |||||||||| || |||||||||||    
T  43812863 attactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtctaaggctatagccttta 43812764  T
Q  425 tgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtga 488  Q
    ||||||||||||||| ||||||| ||| |||||||||| |||| ||||  |||||| |||||||    
T  43812763 tgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtga 43812700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 500 - 656
Target Start/End: Original strand, 1109017 - 1109169
Alignment:
Q  500 ctgtgaacgatggttcagacatatgaatgtgatctttgcagttcacaatgtgtctgaacagattgagatcaataatggcatggaaccccttcctgcagat 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1109017 ctgtgaacgatggttcagacatatgaatgtgatctttgcagttcacaatgtgtctgaacagattgagatcaataatggcatggaaccccttcctgcagat 1109116  T
Q  600 gctacagatcatgtgcagagaaatacgtataaggatgtgaagaagaaagcatatatt 656  Q
    |||||||||   || |||||||||| |||||| ||||||||||||||||||||||||    
T  1109117 gctacagat---gt-cagagaaatatgtataacgatgtgaagaagaaagcatatatt 1109169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
Q  316 agatttttcatcactcttggatgcctcatgagctctgataaagcccactc 365  Q
    |||||||||||||||||||||||||| |  || || ||||||||||||||    
T  29944776 agatttttcatcactcttggatgccttaaaagttcggataaagcccactc 29944727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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