View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_104 (Length: 332)
Name: NF10049A_low_104
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_104 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 20486915 - 20487240
Alignment:
| Q |
1 |
attaatctcatgttaatatattgtctaatgaaagaggttgtcattactaataaattctatgatgttttgacaagttatacctttgaaatgctagaaggat |
100 |
Q |
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| T |
20486915 |
attaatcccatgttaatatattgtctaatgaaagacgttgtcattactaataaattctatgatgttttgacaggctatacctctgaaacgctagaaggat |
20487014 |
T |
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| Q |
101 |
caatatatgttggcactcccaacgtttgcgaatgatccttaagtcaacgctgcactgactttctagttgctgaagatggcggttgtttcatattgttgag |
200 |
Q |
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| T |
20487015 |
ccatatatgttggcactcccaacgtttgcgaaagatccttaagtcaaggctgcactgactttctggttgctgaagatggtggttgtttcatattgttgag |
20487114 |
T |
|
| Q |
201 |
actcttgccagacctccaatgcatacaatagacattgtcctgactgggggaagataatttttcaatggtaatggtcatattatcccactggacgtgtcaa |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
20487115 |
actctttccagacctccaatgcatacaatagacattgtcctgactgagggaagataatttttcaatggtaatggtcatattgtcccactggacatgtcaa |
20487214 |
T |
|
| Q |
301 |
atttgtcaatggaagcgtgaacttta |
326 |
Q |
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||||||||||||||||||||| |||| |
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| T |
20487215 |
atttgtcaatggaagcgtgaatttta |
20487240 |
T |
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