View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_105 (Length: 330)
Name: NF10049A_low_105
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_105 |
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| [»] scaffold0210 (3 HSPs) |
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| [»] scaffold0479 (2 HSPs) |
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Alignment Details
Target: scaffold0210 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 11142 - 11471
Alignment:
| Q |
1 |
ctcccgaagagaggggaagattgacgtttcctatttcgttaaatcagctgggacctcgtgattctccgatacgagggattgagaaacttctgcgtatcta |
100 |
Q |
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|||||||||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11142 |
ctcccgaagataggggaaggttgatgtttcctatttcgttaaatcagctgggtcctcgtgattatccgatacgagggattgagaaacttctgcgtatcta |
11241 |
T |
|
| Q |
101 |
ttgtactatggacaggtgccatcggaaaatgagactgataagttgttattagctttcaaaaagataaggagggcaaccggcacagacttcatcatatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11242 |
ttgtactatggacaggtgccatcggaaaatgagactgataagttgttattagctttcaaaaagataaggagggcaaccggcacagacttcatcatatctt |
11341 |
T |
|
| Q |
201 |
tggttgtagatgatttttctggttccagcaatccgtatgtttgaaaactcagatctaacatttcagaaaacaatttcactatatatgacattgacagtac |
300 |
Q |
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|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
11342 |
tggttgtagatgatatttctcgttccagcaatccatatgtttgaaaactcagatgtaacatttcgggaaacaatttcactatatatgacattgacagtac |
11441 |
T |
|
| Q |
301 |
ctccacacggagctggaaatcaaccaaata |
330 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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| T |
11442 |
ctccacacgaagctggaaatcaaccaaata |
11471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 3155 - 3321
Alignment:
| Q |
1 |
ctcccgaagagaggggaagattgacgtttcctatttcgttaaatcagctgggacctcgtgattctccgatac-------------gagggattgagaaac |
87 |
Q |
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||||||||||||| |||| |||| |||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| |||| || |
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| T |
3155 |
ctcccgaagagagtcgaaggttgatgttttctatttcgttaaatcagctgggtcctcgtgattctccaatacaatgcttcatcatgagggatagagagac |
3254 |
T |
|
| Q |
88 |
ttctgcgtatctattgtactatggacaggtgccatcggaaaatgagactgataagttgttattagct |
154 |
Q |
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||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3255 |
ttctgcgtatcaattgtactatgtactggtgccatcggaaaatgagactgataagctgttattagct |
3321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 3327 - 3376
Alignment:
| Q |
178 |
cggcacagacttcatcatatctttggttgtagatgatttttctggttcca |
227 |
Q |
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||||||||||||||||||||| |||||| |||||||| |||| |||||| |
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| T |
3327 |
cggcacagacttcatcatatcaatggttgcagatgattcttctcgttcca |
3376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 12713723 - 12713480
Alignment:
| Q |
1 |
ctcccgaagagaggggaagattgacgtttcctatttcgttaaatcagctgggacctcgtgattctccgatacgagggattgagaaacttctgcgtatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12713723 |
ctcccgaagagaggggaagattgacgtttcctatttcgttaaatcagctgggtcctcgtgattctccgatacgagggattgagaaacttctgtgtatcta |
12713624 |
T |
|
| Q |
101 |
ttgtactatggacaggtgccatcggaaaatgagactgataagttgttattagctttcaaaaagataaggagggcaaccggcacagacttcatcatatctt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12713623 |
ttgtactatggacaggtgccatcggaaaatgagactgataagttgttattagctttcaaaaagataaggagggcaaccggcacagacttcatcatatctt |
12713524 |
T |
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| Q |
201 |
tggttgtagatgatttttctggttccagcaatccgtatgtttga |
244 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
12713523 |
tggttgtagatgatttttctcgttccagcaatctgtatgtttga |
12713480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 12721513 - 12721347
Alignment:
| Q |
1 |
ctcccgaagagaggggaagattgacgtttcctatttcgttaaatcagctgggacctcgtgattctccgatac-------------gagggattgagaaac |
87 |
Q |
| |
|
||||||||||||| |||| |||| |||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| |||| || |
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| T |
12721513 |
ctcccgaagagagtcgaaggttgatgttttctatttcgttaaatcagctgggtcctcgtgattctccaatacaatgcttcatcatgagggatagagagac |
12721414 |
T |
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| Q |
88 |
ttctgcgtatctattgtactatggacaggtgccatcggaaaatgagactgataagttgttattagct |
154 |
Q |
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||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
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| T |
12721413 |
ttctgcgtatcaattgtactatgtactggtgccatcggaaaatgagactgataagctgttattagct |
12721347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 12713483 - 12713444
Alignment:
| Q |
291 |
ttgacagtacctccacacggagctggaaatcaaccaaata |
330 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
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| T |
12713483 |
ttgacagtaccaccacacggagctggaaatcaaccaaata |
12713444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 12721341 - 12721292
Alignment:
| Q |
178 |
cggcacagacttcatcatatctttggttgtagatgatttttctggttcca |
227 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||| |||| |||||| |
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| T |
12721341 |
cggcacagacttcatcatatcaatggttgcagatgattcttctcgttcca |
12721292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 125 - 252
Target Start/End: Complemental strand, 7878848 - 7878721
Alignment:
| Q |
125 |
gaaaatgagactgataagttgttattagctttcaaaaagataaggagggcaaccggcacagacttcatcatatctttggttgtagatgatttttctggtt |
224 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
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| T |
7878848 |
gaaaatgagactgataagctgttattagctgccaaaaagataaggagggcaaccggcactgacttcatcatatctttggttgctgatgatttttctcgtt |
7878749 |
T |
|
| Q |
225 |
ccagcaatccgtatgtttgaaaactcag |
252 |
Q |
| |
|
|||||||| |||||||| |||||||||| |
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|
| T |
7878748 |
ccagcaatgcgtatgttggaaaactcag |
7878721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 7879955 - 7879914
Alignment:
| Q |
81 |
gagaaacttctgcgtatctattgtactatggacaggtgccat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7879955 |
gagaaacttctgcgtatctattgtactatggactggtgccat |
7879914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7880149 - 7880107
Alignment:
| Q |
1 |
ctcccgaagagaggggaagattgacgtttcctatttcgttaaa |
43 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
7880149 |
ctcccgaagagtgtggaaggttgacgtttcctatttcgttaaa |
7880107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 12584 - 12747
Alignment:
| Q |
1 |
ctcccgaagagaggggaagattgacgtttcctatttcgttaaatcagctgggacctcgtgattctccgatac-------------gagggattgagaaac |
87 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
12584 |
ctcccgaagagagttgaaggttgacgttttctatgtcgttaaatcagctgggtcctcgtgattctccgatacaatgcttcatcatgagggatagagaaac |
12683 |
T |
|
| Q |
88 |
ttctgcgtatctattgtactatggacaggtgccatcggaaaatgagactgataagttgttatta |
151 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
12684 |
ttctgcgtatcaattgtactatgtactggtgccaccggaaaatgagactgataagctgttatta |
12747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 12756 - 12805
Alignment:
| Q |
178 |
cggcacagacttcatcatatctttggttgtagatgatttttctggttcca |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
12756 |
cggcacagacttcatcatatctttggttgcagatgattcttctcgttcca |
12805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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