View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_108 (Length: 327)
Name: NF10049A_low_108
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_108 |
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| [»] scaffold0166 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 11841737 - 11841872
Alignment:
| Q |
19 |
agaaaggtctaacctttgtcggcgaatgaaaaaaccatcgttcaactaattaaaagatagaatcattgtactgttcaagcaatctctaatagtaaatcta |
118 |
Q |
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| T |
11841737 |
agaaaggtcgaacctttgtcggcgaatgaaaaaaccatcgttagactaattaaaagatagaatcattgtactgttcaagcaatctccaatagtaaatcta |
11841836 |
T |
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| Q |
119 |
tattgattgcatttgaatttttatcatgatcttgat |
154 |
Q |
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| T |
11841837 |
tattgattgcatttgaatttttatcatgatcttgat |
11841872 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 11841890 - 11841962
Alignment:
| Q |
190 |
gaataattagtttatctgatgcatggtttcagatatctttttggcagcagttattaacacagttcacacaatt |
262 |
Q |
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| T |
11841890 |
gaataattagtttatctgatgcatggtttcagatatctttttggcagcggttattaacacagttcacacaatt |
11841962 |
T |
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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 11841988 - 11842037
Alignment:
| Q |
265 |
tccactctaagttgcaatctattcggtctgcaaaagtgcgcattcattct |
314 |
Q |
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| T |
11841988 |
tccactctaagttgcaatctattcagtctgcaaaagtgcgcatccattct |
11842037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 19345581 - 19345650
Alignment:
| Q |
19 |
agaaaggtctaacctttgtcggcgaatgaaaaaaccatcgttcaactaattaaaagatagaatcattgta |
88 |
Q |
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| T |
19345581 |
agaaaggtcgaacctttgtcggcgaatgaaaaaaccatcgttcggctaattagaggatataatcattgta |
19345650 |
T |
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Target: scaffold0166 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 6975 - 7059
Alignment:
| Q |
67 |
attaaaagatagaatcattgtactgttcaagcaatctctaatagtaaatctatattgattgcatttgaatttttatcatgatctt |
151 |
Q |
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| T |
6975 |
attaaaagatagaattactgtagtgttcgaataacctctaatagtaaatttatattgatagaatttgaatttttatcatcatctt |
7059 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 24764478 - 24764562
Alignment:
| Q |
67 |
attaaaagatagaatcattgtactgttcaagcaatctctaatagtaaatctatattgattgcatttgaatttttatcatgatctt |
151 |
Q |
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| T |
24764478 |
attaaaagatagaattactgtagtgttcgaataacctctaatagtaaatttatattgatagaatttgaatttttatcatcatctt |
24764562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 25276486 - 25276546
Alignment:
| Q |
20 |
gaaaggtctaacctttgtcggcgaatgaaaaaaccatcgttcaactaattaaaagatagaa |
80 |
Q |
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| T |
25276486 |
gaaaggacgaacatttgtcgaggaatgaaaaaaccatcgttcgactaattaaaatatagaa |
25276546 |
T |
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