View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_11 (Length: 501)

Name: NF10049A_low_11
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_11
NF10049A_low_11
[»] scaffold0210 (4 HSPs)
scaffold0210 (6-204)||(9195-9391)
scaffold0210 (202-367)||(10860-11027)
scaffold0210 (425-501)||(11085-11160)
scaffold0210 (466-495)||(3138-3167)
[»] chr3 (8 HSPs)
chr3 (212-367)||(12713826-12713983)
chr3 (6-199)||(12714943-12715140)
chr3 (6-127)||(12722241-12722361)
chr3 (6-152)||(12709911-12710059)
chr3 (425-501)||(12713705-12713779)
chr3 (222-278)||(12707916-12707972)
chr3 (293-326)||(12707878-12707911)
chr3 (466-495)||(12721501-12721530)
[»] scaffold0479 (2 HSPs)
scaffold0479 (6-127)||(11810-11930)
scaffold0479 (466-495)||(12567-12596)
[»] chr7 (2 HSPs)
chr7 (224-334)||(19715708-19715818)
chr7 (6-120)||(19713603-19713724)
[»] chr5 (1 HSPs)
chr5 (440-493)||(7880139-7880191)


Alignment Details
Target: scaffold0210 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 9195 - 9391
Alignment:
Q  6 actgagatgaatggtccattacaggatgtgccagacagttttgcatgatgaggcaaaaaggatgtgaatctaaagtttttgtatccaaaactccttacac 105  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  9195 actgagaaggatggtccattacaggatgtgccagacagttttgcatgacgaggcaaaaagaatgtgaatctaaagtttttgtatgcaaaactccttacac 9294  T
Q  106 attgcatttgcaagagtactcaaaaatttagtccggagtctgcaacattgcatttgcaagagttcaatgagggaagggagaaaagatgttgatgataat 204  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  9295 attgcatttgcaagagtactcataaatttagtctggagtctgcaacattgcatttgcaagagttcaatgagggaagggag--aaggtgttgatgataat 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 202 - 367
Target Start/End: Original strand, 10860 - 11027
Alignment:
Q  202 aatagaggagtgcacagtcga--gaagagacaacaaatgaagcatacaaagacgtaaaacagcacactcaaaagttgaaaatacatttcttacaattatt 299  Q
    |||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10860 aatagagaggtgcacagtcgacagaagagacaacaaatgaagcatacaaagacgtaaaacagcacactcaaaagttgaagatacatttcttacaattatt 10959  T
Q  300 acaagaaagcaaaactgtgagctaaaattctaaaaacaactattgataccttaagaaggtgaagatac 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10960 acaagaaagcaaaactgtgagctaaaattctaaaaacaactattgataccttaagaaggtgaagatac 11027  T

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Target: scaffold0210; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 425 - 501
Target Start/End: Original strand, 11085 - 11160
Alignment:
Q  425 ccctcctacatcaaatgtgtaaattcaaggagggccgttacacaagagattgttcagactcccgaagagaggggaag 501  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11085 ccctcctacatcaa-tgtgtaaattcaaggagggccgttacacaagagattgttcagactcccgaagataggggaag 11160  T

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Target: scaffold0210; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 495
Target Start/End: Original strand, 3138 - 3167
Alignment:
Q  466 acaagagattgttcagactcccgaagagag 495  Q
    ||||||||||||||||||||||||||||||    
T  3138 acaagagattgttcagactcccgaagagag 3167  T

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Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 212 - 367
Target Start/End: Complemental strand, 12713983 - 12713826
Alignment:
Q  212 tgcacagtcga--gaagagacaacaaatgaagcatacaaagacgtaaaacagcacactcaaaagttgaaaatacatttcttacaattattacaagaaagc 309  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12713983 tgcacagtcgacagaagagacaacaaatgaagcatacaaagacataaaacagcacactcaaaagttgaagatacatttcttacaattattacaagaaagc 12713884  T
Q  310 aaaactgtgagctaaaattctaaaaacaactattgataccttaagaaggtgaagatac 367  Q
    |||||||||| |||||| ||||||| ||||||||| |||||||||||| | |||||||    
T  12713883 aaaactgtgacctaaaagtctaaaaccaactattgttaccttaagaagctaaagatac 12713826  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 12715140 - 12714943
Alignment:
Q  6 actgagatgaatggtccattacaggatgtgccagacagttttgcatgatgaggcaaaaaggatgtgaatctaaagtttttgtatccaaaactccttacac 105  Q
    ||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||     
T  12715140 actgagaaggatggtccgttacaggatgtgccagacagttttgcatgacgaggcaaaaaggatgcaaatctaaagtttttgtatccaaaactccttacaa 12715041  T
Q  106 attgcatttgcaagagtactcaaaaatttagtccggagtctgcaacattgcatt-tg--caaga-gttcaatgagggaagggagaaaagatgttgatg 199  Q
    ||||||||||||||| |||||| |||||||||  ||  ||||||||| |   || ||  ||| | |||||||||||||||||||||||||||||||||    
T  12715040 attgcatttgcaagaatactcataaatttagtttggcttctgcaacaatattttctgatcaaaatgttcaatgagggaagggagaaaagatgttgatg 12714943  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 12722361 - 12722241
Alignment:
Q  6 actgagatgaatggtccattacaggatgtgccagacagttttgcatgatgaggcaaaaaggatgtgaatctaaagtttttgtatccaaaactccttacac 105  Q
    ||||||| | |||||||||||||| |||||| ||| ||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  12722361 actgagaaggatggtccattacagaatgtgc-agagagttttgtatgacaaggcaaaaaggatgtgaatccaaagtttttgtatccaaaacttcttacac 12722263  T
Q  106 attgcatttgcaagagtactca 127  Q
    ||||||||||||||||||||||    
T  12722262 attgcatttgcaagagtactca 12722241  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 12710059 - 12709911
Alignment:
Q  6 actgagatgaatggtccattacaggatgtgccagacagttttgcatgatgaggcaaaaaggatgtgaatctaaag-tttttgtatccaaaactc-cttac 103  Q
    ||||||| | |||||||||||||||||||||||| || ||||||||||  |||||||||||||| || || |||| ||||| |||||||||||| |||||    
T  12710059 actgagaaggatggtccattacaggatgtgccaggcatttttgcatgacaaggcaaaaaggatgcgagtccaaagttttttttatccaaaactctcttac 12709960  T
Q  104 acattgcatttgcaagagtactcaaaaatttagtccggagtctgcaaca 152  Q
    ||||||||||||||| |||||||| |||| ||||  ||| |||||||||    
T  12709959 acattgcatttgcaatagtactcataaatctagtatggaatctgcaaca 12709911  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 425 - 501
Target Start/End: Complemental strand, 12713779 - 12713705
Alignment:
Q  425 ccctcctacatcaaatgtgtaaattcaaggagggccgttacacaagagattgttcagactcccgaagagaggggaag 501  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12713779 ccctcctacatcga-tgtgtaaat-caaggagggccgttacacaagagattgttcagactcccgaagagaggggaag 12713705  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 12707972 - 12707916
Alignment:
Q  222 agaagagacaacaaatgaagcatacaaagacgtaaaacagcacactcaaaagttgaa 278  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  12707972 agaagagacaataaatgaagcatacaatgacataaaacagcacactcaaaagttgaa 12707916  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 12707911 - 12707878
Alignment:
Q  293 aattattacaagaaagcaaaactgtgagctaaaa 326  Q
    ||||||||||||||||||||| ||||||||||||    
T  12707911 aattattacaagaaagcaaaattgtgagctaaaa 12707878  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 495
Target Start/End: Complemental strand, 12721530 - 12721501
Alignment:
Q  466 acaagagattgttcagactcccgaagagag 495  Q
    ||||||||||||||||||||||||||||||    
T  12721530 acaagagattgttcagactcccgaagagag 12721501  T

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Target: scaffold0479 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 11810 - 11930
Alignment:
Q  6 actgagatgaatggtccattacaggatgtgccagacagttttgcatgatgaggcaaaaaggatgtgaatctaaagtttttgtatccaaaactccttacac 105  Q
    ||||||| | ||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  11810 actgagaaggatggtccattacaggatgtgc-agagagttttgcatgacaaggcaaaaaggatgtgaatccaaagtttttgtatccaaaacttcttacac 11908  T
Q  106 attgcatttgcaagagtactca 127  Q
    ||||||||||||||||||||||    
T  11909 attgcatttgcaagagtactca 11930  T

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Target: scaffold0479; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 495
Target Start/End: Original strand, 12567 - 12596
Alignment:
Q  466 acaagagattgttcagactcccgaagagag 495  Q
    ||||||||||||||||||||||||||||||    
T  12567 acaagagattgttcagactcccgaagagag 12596  T

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Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 19715708 - 19715818
Alignment:
Q  224 aagagacaacaaatgaagcatacaaagacgtaaaacagcacactcaaaagttgaaaatacatttcttacaattattacaagaaagcaaaactgtgagcta 323  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||   |||||| || ||||||||||||||||||||||||||||||||    
T  19715708 aagagacaataaatgaagcatacaaagacataaaacagcacactcaaaagttgaagcaacatttgttgcaattattacaagaaagcaaaactgtgagcta 19715807  T
Q  324 aaattctaaaa 334  Q
    ||| |||||||    
T  19715808 aaagtctaaaa 19715818  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 19713603 - 19713724
Alignment:
Q  6 actgagatgaatggtccattacaggatgtgccagacag-------ttttgcatgatgaggcaaaaaggatgtgaatctaaagtttttgtatccaaaactc 98  Q
    ||||||| | |||||||||||||||||||||||||| |       ||||||||||  ||||||||||| |||||||| |||||| |||||||||||| ||    
T  19713603 actgagaaggatggtccattacaggatgtgccagacggcagacacttttgcatgacaaggcaaaaaggttgtgaatccaaagttattgtatccaaaaatc 19713702  T
Q  99 cttacacattgcatttgcaaga 120  Q
    ||| ||||||||||| ||||||    
T  19713703 cttgcacattgcattggcaaga 19713724  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 7880191 - 7880139
Alignment:
Q  440 tgtgtaaattcaaggagggccgttacacaagagattgttcagactcccgaagag 493  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  7880191 tgtgtaaat-catggagggccgttacacaagagattgttcagactcccgaagag 7880139  T

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