View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_110 (Length: 324)
Name: NF10049A_low_110
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 45539392 - 45539602
Alignment:
| Q |
5 |
gcgggctggtcagcagtctcgttcaatttttcagatgcattgattttgtatgtaacattgttattttctccacatgtttttaaataaattgtttggcagg |
104 |
Q |
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| T |
45539392 |
gcggcctggtcagcagtctcgttcaatttttcagatgcattgattttgtatgtaacattgttattttctccacatgtttttaaataaattgtttggcagg |
45539491 |
T |
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| Q |
105 |
cttgtatggtgttttataatttcattgtatgcatggatgaattttgttattgaattgtttgagagacttaatctttaaataattatgtgttatgattaga |
204 |
Q |
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| T |
45539492 |
cttgtatggtgttttataatttcattgtatgcatggatgaattttgttattgaattgtttgagagacttaatctttaaataattatgtgttatgattaga |
45539591 |
T |
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| Q |
205 |
taaataattgg |
215 |
Q |
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| T |
45539592 |
taaataattgg |
45539602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 45539665 - 45539711
Alignment:
| Q |
278 |
tatttcatacatttaatgttgtaatatttagcggagatgcacatatt |
324 |
Q |
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| T |
45539665 |
tatttcatacatttaatgttgtaatatttagcggagatgcacatatt |
45539711 |
T |
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